ZSCA4.H12INVIVO.0.SM.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZSCA4.H12INVIVO.0.SM.D
Gene (human)	ZSCAN4 (GeneCards)
Gene synonyms (human)	ZNF494
Gene (mouse)	Zscan4c
Gene synonyms (mouse)	Gm397
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	17
Consensus	nbTTWCAGbGTGTGCdn
GC content	51.25%
Information content (bits; total / per base)	21.303 / 1.253
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	7754

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 4 experiments	median	0.991	0.991	0.887	0.898	0.8	0.819
Overall, 4 experiments	best	1.0	1.0	1.0	1.0	0.99	0.99
Methyl HT-SELEX, 1 experiments	median	1.0	1.0	1.0	1.0	0.99	0.99
Methyl HT-SELEX, 1 experiments	best	1.0	1.0	1.0	1.0	0.99	0.99
Non-Methyl HT-SELEX, 3 experiments	median	0.981	0.982	0.773	0.797	0.641	0.677
Non-Methyl HT-SELEX, 3 experiments	best	1.0	1.0	1.0	1.0	0.959	0.962

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZSCAN5-like {2.3.3.5} (TFClass)
TFClass ID	TFClass: 2.3.3.5.5
HGNC	HGNC:23709
MGI	MGI:2685243
EntrezGene (human)	GeneID:201516 (SSTAR profile)
EntrezGene (mouse)	GeneID:245109 (SSTAR profile)
UniProt ID (human)	ZSCA4_HUMAN
UniProt ID (mouse)	ZSC4C_MOUSE
UniProt AC (human)	Q8NAM6 (TFClass)
UniProt AC (mouse)	Q80VJ6 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	3
Methyl-HT-SELEX	1

PCM	ZSCA4.H12INVIVO.0.SM.D.pcm
PWM	ZSCA4.H12INVIVO.0.SM.D.pwm
PFM	ZSCA4.H12INVIVO.0.SM.D.pfm
Alignment	ZSCA4.H12INVIVO.0.SM.D.words.tsv
Threshold to P-value map	ZSCA4.H12INVIVO.0.SM.D.thr
Motif in other formats
JASPAR format	ZSCA4.H12INVIVO.0.SM.D_jaspar_format.txt
MEME format	ZSCA4.H12INVIVO.0.SM.D_meme_format.meme
Transfac format	ZSCA4.H12INVIVO.0.SM.D_transfac_format.txt
Homer format	ZSCA4.H12INVIVO.0.SM.D_homer_format_0.001.txt ZSCA4.H12INVIVO.0.SM.D_homer_format_0.0005.txt ZSCA4.H12INVIVO.0.SM.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2579.25	1199.25	1881.25	2094.25
02	1031.5	1581.5	1333.5	3807.5
03	20.0	43.0	19.0	7672.0
04	62.0	22.0	1898.0	5772.0
05	1003.0	747.0	789.0	5215.0
06	313.0	7313.0	101.0	27.0
07	7592.0	118.0	20.0	24.0
08	5.0	3.0	7734.0	12.0
09	33.0	2616.0	3056.0	2049.0
10	54.0	3.0	7694.0	3.0
11	0.0	2.0	6.0	7746.0
12	4.0	0.0	7749.0	1.0
13	2.0	4.0	2.0	7746.0
14	2.0	1.0	7749.0	2.0
15	4.0	6631.0	8.0	1111.0
16	3912.5	555.5	2187.5	1098.5
17	1148.5	2548.5	1939.5	2117.5

PFM

	A	C	G	T
01	0.333	0.155	0.243	0.27
02	0.133	0.204	0.172	0.491
03	0.003	0.006	0.002	0.989
04	0.008	0.003	0.245	0.744
05	0.129	0.096	0.102	0.673
06	0.04	0.943	0.013	0.003
07	0.979	0.015	0.003	0.003
08	0.001	0.0	0.997	0.002
09	0.004	0.337	0.394	0.264
10	0.007	0.0	0.992	0.0
11	0.0	0.0	0.001	0.999
12	0.001	0.0	0.999	0.0
13	0.0	0.001	0.0	0.999
14	0.0	0.0	0.999	0.0
15	0.001	0.855	0.001	0.143
16	0.505	0.072	0.282	0.142
17	0.148	0.329	0.25	0.273

PWM

	A	C	G	T
01	0.285	-0.48	-0.03	0.077
02	-0.63	-0.203	-0.374	0.674
03	-4.469	-3.759	-4.515	1.375
04	-3.408	-4.383	-0.021	1.09
05	-0.658	-0.952	-0.897	0.989
06	-1.817	1.327	-2.934	-4.195
07	1.364	-2.781	-4.469	-4.304
08	-5.591	-5.915	1.383	-4.915
09	-4.009	0.299	0.455	0.055
10	-3.541	-5.915	1.378	-5.915
11	-6.765	-6.126	-5.462	1.384
12	-5.74	-6.765	1.385	-6.396
13	-6.126	-5.74	-6.126	1.384
14	-6.126	-6.396	1.385	-6.126
15	-5.74	1.229	-5.245	-0.556
16	0.702	-1.247	0.121	-0.567
17	-0.523	0.273	0.001	0.088

Standard thresholds

P-value	Threshold
0.001	-5.08214
0.0005	-3.03379
0.0001	1.39786