MotifZSCA4.H12INVITRO.0.SM.B
Gene (human)ZSCAN4
(GeneCards)
Gene synonyms (human)ZNF494
Gene (mouse)Zscan4c
Gene synonyms (mouse)Gm397
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length17
ConsensusnbTTWCAGbGTGTGCdn
GC content51.25%
Information content (bits; total / per base)21.303 / 1.253
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words7754

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.991 0.991 0.887 0.898 0.8 0.819
best 1.0 1.0 1.0 1.0 0.99 0.99
Methyl HT-SELEX, 1 experiments median 1.0 1.0 1.0 1.0 0.99 0.99
best 1.0 1.0 1.0 1.0 0.99 0.99
Non-Methyl HT-SELEX, 3 experiments median 0.981 0.982 0.773 0.797 0.641 0.677
best 1.0 1.0 1.0 1.0 0.959 0.962
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZSCAN5-like {2.3.3.5} (TFClass)
TFClass IDTFClass: 2.3.3.5.5
HGNCHGNC:23709
MGIMGI:2685243
EntrezGene (human)GeneID:201516
(SSTAR profile)
EntrezGene (mouse)GeneID:245109
(SSTAR profile)
UniProt ID (human)ZSCA4_HUMAN
UniProt ID (mouse)ZSC4C_MOUSE
UniProt AC (human)Q8NAM6
(TFClass)
UniProt AC (mouse)Q80VJ6
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
012579.251199.251881.252094.25
021031.51581.51333.53807.5
0320.043.019.07672.0
0462.022.01898.05772.0
051003.0747.0789.05215.0
06313.07313.0101.027.0
077592.0118.020.024.0
085.03.07734.012.0
0933.02616.03056.02049.0
1054.03.07694.03.0
110.02.06.07746.0
124.00.07749.01.0
132.04.02.07746.0
142.01.07749.02.0
154.06631.08.01111.0
163912.5555.52187.51098.5
171148.52548.51939.52117.5
PFM
ACGT
010.3330.1550.2430.27
020.1330.2040.1720.491
030.0030.0060.0020.989
040.0080.0030.2450.744
050.1290.0960.1020.673
060.040.9430.0130.003
070.9790.0150.0030.003
080.0010.00.9970.002
090.0040.3370.3940.264
100.0070.00.9920.0
110.00.00.0010.999
120.0010.00.9990.0
130.00.0010.00.999
140.00.00.9990.0
150.0010.8550.0010.143
160.5050.0720.2820.142
170.1480.3290.250.273
PWM
ACGT
010.285-0.48-0.030.077
02-0.63-0.203-0.3740.674
03-4.469-3.759-4.5151.375
04-3.408-4.383-0.0211.09
05-0.658-0.952-0.8970.989
06-1.8171.327-2.934-4.195
071.364-2.781-4.469-4.304
08-5.591-5.9151.383-4.915
09-4.0090.2990.4550.055
10-3.541-5.9151.378-5.915
11-6.765-6.126-5.4621.384
12-5.74-6.7651.385-6.396
13-6.126-5.74-6.1261.384
14-6.126-6.3961.385-6.126
15-5.741.229-5.245-0.556
160.702-1.2470.121-0.567
17-0.5230.2730.0010.088
Standard thresholds
P-value Threshold
0.001 -5.08214
0.0005 -3.03379
0.0001 1.39786