ZSC31.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZSC31.H12RSNP.0.P.D
Gene (human)	ZSCAN31 (GeneCards)
Gene synonyms (human)	ZNF310P, ZNF323
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	17
Consensus	RKMWGCRGRGCMdKbRb
GC content	60.24%
Information content (bits; total / per base)	13.95 / 0.821
Data sources	ChIP-Seq
Aligned words	850

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.774	0.791	0.762	0.781	0.744	0.761	4.196	4.463	260.721	300.409

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.764	0.775	0.626	0.647	0.563	0.585
Overall, 2 experiments	best	0.828	0.835	0.658	0.681	0.577	0.605
Methyl HT-SELEX, 1 experiments	median	0.828	0.835	0.658	0.681	0.577	0.605
Methyl HT-SELEX, 1 experiments	best	0.828	0.835	0.658	0.681	0.577	0.605
Non-Methyl HT-SELEX, 1 experiments	median	0.7	0.716	0.594	0.612	0.548	0.565
Non-Methyl HT-SELEX, 1 experiments	best	0.7	0.716	0.594	0.612	0.548	0.565

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF24-like {2.3.3.10} (TFClass)
TFClass ID	TFClass: 2.3.3.10.7
HGNC	HGNC:14097
MGI
EntrezGene (human)	GeneID:64288 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZSC31_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96LW9 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	ZSC31.H12RSNP.0.P.D.pcm
PWM	ZSC31.H12RSNP.0.P.D.pwm
PFM	ZSC31.H12RSNP.0.P.D.pfm
Alignment	ZSC31.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZSC31.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZSC31.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZSC31.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZSC31.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZSC31.H12RSNP.0.P.D_homer_format_0.001.txt ZSC31.H12RSNP.0.P.D_homer_format_0.0005.txt ZSC31.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	182.0	38.0	481.0	149.0
02	72.0	41.0	548.0	189.0
03	106.0	643.0	48.0	53.0
04	512.0	146.0	22.0	170.0
05	22.0	16.0	780.0	32.0
06	19.0	787.0	11.0	33.0
07	648.0	26.0	156.0	20.0
08	10.0	11.0	802.0	27.0
09	70.0	39.0	681.0	60.0
10	52.0	16.0	754.0	28.0
11	36.0	794.0	10.0	10.0
12	573.0	115.0	102.0	60.0
13	245.0	113.0	345.0	147.0
14	68.0	74.0	176.0	532.0
15	98.0	105.0	213.0	434.0
16	522.0	120.0	135.0	73.0
17	91.0	140.0	217.0	402.0

PFM

	A	C	G	T
01	0.214	0.045	0.566	0.175
02	0.085	0.048	0.645	0.222
03	0.125	0.756	0.056	0.062
04	0.602	0.172	0.026	0.2
05	0.026	0.019	0.918	0.038
06	0.022	0.926	0.013	0.039
07	0.762	0.031	0.184	0.024
08	0.012	0.013	0.944	0.032
09	0.082	0.046	0.801	0.071
10	0.061	0.019	0.887	0.033
11	0.042	0.934	0.012	0.012
12	0.674	0.135	0.12	0.071
13	0.288	0.133	0.406	0.173
14	0.08	0.087	0.207	0.626
15	0.115	0.124	0.251	0.511
16	0.614	0.141	0.159	0.086
17	0.107	0.165	0.255	0.473

PWM

	A	C	G	T
01	-0.154	-1.686	0.813	-0.352
02	-1.067	-1.613	0.943	-0.116
03	-0.688	1.102	-1.461	-1.365
04	0.875	-0.372	-2.202	-0.221
05	-2.202	-2.494	1.295	-1.85
06	-2.337	1.304	-2.826	-1.821
07	1.11	-2.046	-0.306	-2.29
08	-2.908	-2.826	1.322	-2.01
09	-1.095	-1.661	1.159	-1.245
10	-1.384	-2.494	1.261	-1.976
11	-1.738	1.312	-2.908	-2.908
12	0.987	-0.607	-0.725	-1.245
13	0.141	-0.625	0.482	-0.365
14	-1.123	-1.04	-0.187	0.913
15	-0.765	-0.697	0.002	0.71
16	0.894	-0.565	-0.449	-1.054
17	-0.838	-0.413	0.021	0.634

Standard thresholds

P-value	Threshold
0.001	3.68541
0.0005	4.68486
0.0001	6.79701