ZSC31.H12CORE.1.SM.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZSC31.H12CORE.1.SM.B
Gene (human)	ZSCAN31 (GeneCards)
Gene synonyms (human)	ZNF310P, ZNF323
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	20
Consensus	dRhhGCAGGGCARTWAKRhn
GC content	56.05%
Information content (bits; total / per base)	21.351 / 1.068
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	1901

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.709	0.727	0.667	0.689	0.689	0.704	3.475	3.69	212.721	239.301

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.79	0.794	0.657	0.667	0.586	0.601
Overall, 2 experiments	best	0.846	0.847	0.691	0.701	0.606	0.623
Methyl HT-SELEX, 1 experiments	median	0.846	0.847	0.691	0.701	0.606	0.623
Methyl HT-SELEX, 1 experiments	best	0.846	0.847	0.691	0.701	0.606	0.623
Non-Methyl HT-SELEX, 1 experiments	median	0.734	0.742	0.623	0.633	0.566	0.579
Non-Methyl HT-SELEX, 1 experiments	best	0.734	0.742	0.623	0.633	0.566	0.579

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF24-like {2.3.3.10} (TFClass)
TFClass ID	TFClass: 2.3.3.10.7
HGNC	HGNC:14097
MGI
EntrezGene (human)	GeneID:64288 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZSC31_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96LW9 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	ZSC31.H12CORE.1.SM.B.pcm
PWM	ZSC31.H12CORE.1.SM.B.pwm
PFM	ZSC31.H12CORE.1.SM.B.pfm
Alignment	ZSC31.H12CORE.1.SM.B.words.tsv
Threshold to P-value map	ZSC31.H12CORE.1.SM.B.thr
Motif in other formats
JASPAR format	ZSC31.H12CORE.1.SM.B_jaspar_format.txt
MEME format	ZSC31.H12CORE.1.SM.B_meme_format.meme
Transfac format	ZSC31.H12CORE.1.SM.B_transfac_format.txt
Homer format	ZSC31.H12CORE.1.SM.B_homer_format_0.001.txt ZSC31.H12CORE.1.SM.B_homer_format_0.0005.txt ZSC31.H12CORE.1.SM.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	368.75	286.75	918.75	326.75
02	306.75	150.75	1248.75	194.75
03	764.0	490.0	314.0	333.0
04	517.0	752.0	244.0	388.0
05	58.0	5.0	1826.0	12.0
06	28.0	1704.0	108.0	61.0
07	1869.0	1.0	26.0	5.0
08	149.0	6.0	1743.0	3.0
09	4.0	0.0	1894.0	3.0
10	1.0	0.0	1899.0	1.0
11	115.0	1718.0	29.0	39.0
12	1726.0	114.0	51.0	10.0
13	693.0	3.0	1185.0	20.0
14	7.0	47.0	204.0	1643.0
15	278.0	19.0	139.0	1465.0
16	1780.0	10.0	86.0	25.0
17	43.0	55.0	470.0	1333.0
18	262.0	98.0	1485.0	56.0
19	324.0	1058.0	142.0	377.0
20	467.25	530.25	250.25	653.25

PFM

	A	C	G	T
01	0.194	0.151	0.483	0.172
02	0.161	0.079	0.657	0.102
03	0.402	0.258	0.165	0.175
04	0.272	0.396	0.128	0.204
05	0.031	0.003	0.961	0.006
06	0.015	0.896	0.057	0.032
07	0.983	0.001	0.014	0.003
08	0.078	0.003	0.917	0.002
09	0.002	0.0	0.996	0.002
10	0.001	0.0	0.999	0.001
11	0.06	0.904	0.015	0.021
12	0.908	0.06	0.027	0.005
13	0.365	0.002	0.623	0.011
14	0.004	0.025	0.107	0.864
15	0.146	0.01	0.073	0.771
16	0.936	0.005	0.045	0.013
17	0.023	0.029	0.247	0.701
18	0.138	0.052	0.781	0.029
19	0.17	0.557	0.075	0.198
20	0.246	0.279	0.132	0.344

PWM

	A	C	G	T
01	-0.253	-0.503	0.657	-0.373
02	-0.436	-1.14	0.964	-0.886
03	0.473	0.03	-0.412	-0.354
04	0.084	0.457	-0.663	-0.202
05	-2.075	-4.238	1.343	-3.537
06	-2.77	1.274	-1.468	-2.026
07	1.366	-5.107	-2.84	-4.238
08	-1.151	-4.103	1.297	-4.581
09	-4.395	-5.533	1.38	-4.581
10	-5.107	-5.533	1.382	-5.107
11	-1.407	1.282	-2.737	-2.457
12	1.287	-1.415	-2.2	-3.692
13	0.376	-4.581	0.911	-3.082
14	-3.983	-2.278	-0.84	1.238
15	-0.533	-3.129	-1.22	1.123
16	1.318	-3.692	-1.692	-2.876
17	-2.364	-2.127	-0.011	1.029
18	-0.592	-1.564	1.137	-2.109
19	-0.381	0.798	-1.199	-0.231
20	-0.017	0.109	-0.638	0.317

Standard thresholds

P-value	Threshold
0.001	-1.04029
0.0005	0.54181
0.0001	3.87636