ZSC29.H12INVITRO.1.M.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZSC29.H12INVITRO.1.M.C
Gene (human)	ZSCAN29 (GeneCards)
Gene synonyms (human)	ZNF690
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	C

Motif length	20
Consensus	hRWARMCGTCTACACvdhhn
GC content	44.34%
Information content (bits; total / per base)	19.008 / 0.95
Data sources	Methyl-HT-SELEX
Aligned words	770

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (25)	0.648	0.686	0.544	0.621	0.666	0.688	1.997	2.406	39.161	63.745

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Methyl HT-SELEX, 1 experiments	median	0.921	0.911	0.749	0.757	0.627	0.654
Methyl HT-SELEX, 1 experiments	best	0.921	0.911	0.749	0.757	0.627	0.654

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF500-like {2.3.3.19} (TFClass)
TFClass ID	TFClass: 2.3.3.19.4
HGNC	HGNC:26673
MGI
EntrezGene (human)	GeneID:146050 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZSC29_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8IWY8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	1

PCM	ZSC29.H12INVITRO.1.M.C.pcm
PWM	ZSC29.H12INVITRO.1.M.C.pwm
PFM	ZSC29.H12INVITRO.1.M.C.pfm
Alignment	ZSC29.H12INVITRO.1.M.C.words.tsv
Threshold to P-value map	ZSC29.H12INVITRO.1.M.C.thr
Motif in other formats
JASPAR format	ZSC29.H12INVITRO.1.M.C_jaspar_format.txt
MEME format	ZSC29.H12INVITRO.1.M.C_meme_format.meme
Transfac format	ZSC29.H12INVITRO.1.M.C_transfac_format.txt
Homer format	ZSC29.H12INVITRO.1.M.C_homer_format_0.001.txt ZSC29.H12INVITRO.1.M.C_homer_format_0.0005.txt ZSC29.H12INVITRO.1.M.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	103.5	261.5	51.5	353.5
02	430.0	73.0	213.0	54.0
03	94.0	56.0	31.0	589.0
04	635.0	61.0	37.0	37.0
05	380.0	52.0	291.0	47.0
06	482.0	225.0	20.0	43.0
07	2.0	754.0	3.0	11.0
08	69.0	0.0	701.0	0.0
09	0.0	0.0	12.0	758.0
10	0.0	743.0	0.0	27.0
11	0.0	0.0	0.0	770.0
12	768.0	0.0	0.0	2.0
13	6.0	665.0	1.0	98.0
14	476.0	1.0	292.0	1.0
15	41.0	639.0	12.0	78.0
16	344.0	108.0	220.0	98.0
17	314.0	109.0	175.0	172.0
18	276.5	134.5	107.5	251.5
19	158.75	361.75	68.75	180.75
20	237.75	222.75	125.75	183.75

PFM

	A	C	G	T
01	0.134	0.34	0.067	0.459
02	0.558	0.095	0.277	0.07
03	0.122	0.073	0.04	0.765
04	0.825	0.079	0.048	0.048
05	0.494	0.068	0.378	0.061
06	0.626	0.292	0.026	0.056
07	0.003	0.979	0.004	0.014
08	0.09	0.0	0.91	0.0
09	0.0	0.0	0.016	0.984
10	0.0	0.965	0.0	0.035
11	0.0	0.0	0.0	1.0
12	0.997	0.0	0.0	0.003
13	0.008	0.864	0.001	0.127
14	0.618	0.001	0.379	0.001
15	0.053	0.83	0.016	0.101
16	0.447	0.14	0.286	0.127
17	0.408	0.142	0.227	0.223
18	0.359	0.175	0.14	0.327
19	0.206	0.47	0.089	0.235
20	0.309	0.289	0.163	0.239

PWM

	A	C	G	T
01	-0.613	0.304	-1.295	0.604
02	0.799	-0.956	0.1	-1.249
03	-0.708	-1.214	-1.782	1.113
04	1.188	-1.131	-1.614	-1.614
05	0.676	-1.286	0.41	-1.384
06	0.913	0.155	-2.193	-1.47
07	-3.971	1.359	-3.729	-2.73
08	-1.011	-4.761	1.286	-4.761
09	-4.761	-4.761	-2.654	1.364
10	-4.761	1.344	-4.761	-1.913
11	-4.761	-4.761	-4.761	1.38
12	1.377	-4.761	-4.761	-3.971
13	-3.232	1.234	-4.29	-0.667
14	0.9	-4.29	0.414	-4.29
15	-1.515	1.194	-2.654	-0.891
16	0.577	-0.571	0.132	-0.667
17	0.486	-0.562	-0.094	-0.112
18	0.36	-0.355	-0.576	0.265
19	-0.191	0.627	-1.014	-0.062
20	0.209	0.145	-0.421	-0.046

Standard thresholds

P-value	Threshold
0.001	0.33046
0.0005	1.84096
0.0001	5.00011