ZSC29.H12INVITRO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZSC29.H12INVITRO.0.P.B
Gene (human)	ZSCAN29 (GeneCards)
Gene synonyms (human)	ZNF690
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	11
Consensus	bKTCTAYRMnR
GC content	53.63%
Information content (bits; total / per base)	10.613 / 0.965
Data sources	ChIP-Seq
Aligned words	178

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (25)	0.702	0.764	0.621	0.717	0.721	0.8	2.932	4.021	66.62	124.444

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Methyl HT-SELEX, 1 experiments	median	0.854	0.828	0.718	0.709	0.616	0.628
Methyl HT-SELEX, 1 experiments	best	0.854	0.828	0.718	0.709	0.616	0.628

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF500-like {2.3.3.19} (TFClass)
TFClass ID	TFClass: 2.3.3.19.4
HGNC	HGNC:26673
MGI
EntrezGene (human)	GeneID:146050 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZSC29_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8IWY8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	1

PCM	ZSC29.H12INVITRO.0.P.B.pcm
PWM	ZSC29.H12INVITRO.0.P.B.pwm
PFM	ZSC29.H12INVITRO.0.P.B.pfm
Alignment	ZSC29.H12INVITRO.0.P.B.words.tsv
Threshold to P-value map	ZSC29.H12INVITRO.0.P.B.thr
Motif in other formats
JASPAR format	ZSC29.H12INVITRO.0.P.B_jaspar_format.txt
MEME format	ZSC29.H12INVITRO.0.P.B_meme_format.meme
Transfac format	ZSC29.H12INVITRO.0.P.B_transfac_format.txt
Homer format	ZSC29.H12INVITRO.0.P.B_homer_format_0.001.txt ZSC29.H12INVITRO.0.P.B_homer_format_0.0005.txt ZSC29.H12INVITRO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	20.0	91.0	24.0	43.0
02	9.0	8.0	140.0	21.0
03	3.0	5.0	2.0	168.0
04	1.0	162.0	0.0	15.0
05	4.0	9.0	1.0	164.0
06	148.0	22.0	4.0	4.0
07	11.0	134.0	4.0	29.0
08	115.0	3.0	59.0	1.0
09	21.0	135.0	7.0	15.0
10	45.0	35.0	59.0	39.0
11	24.0	9.0	137.0	8.0

PFM

	A	C	G	T
01	0.112	0.511	0.135	0.242
02	0.051	0.045	0.787	0.118
03	0.017	0.028	0.011	0.944
04	0.006	0.91	0.0	0.084
05	0.022	0.051	0.006	0.921
06	0.831	0.124	0.022	0.022
07	0.062	0.753	0.022	0.163
08	0.646	0.017	0.331	0.006
09	0.118	0.758	0.039	0.084
10	0.253	0.197	0.331	0.219
11	0.135	0.051	0.77	0.045

PWM

	A	C	G	T
01	-0.766	0.701	-0.594	-0.033
02	-1.492	-1.595	1.127	-0.72
03	-2.367	-1.984	-2.632	1.307
04	-2.993	1.271	-3.565	-1.033
05	-2.157	-1.492	-2.993	1.284
06	1.182	-0.676	-2.157	-2.157
07	-1.315	1.083	-2.157	-0.413
08	0.932	-2.367	0.275	-2.993
09	-0.72	1.091	-1.708	-1.033
10	0.011	-0.232	0.275	-0.128
11	-0.594	-1.492	1.105	-1.595

Standard thresholds

P-value	Threshold
0.001	4.6919
0.0005	5.501645
0.0001	7.23701