ZSC29.H12CORE.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZSC29.H12CORE.0.P.B
Gene (human)	ZSCAN29 (GeneCards)
Gene synonyms (human)	ZNF690
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	12
Consensus	bbGTCTACRCnG
GC content	60.75%
Information content (bits; total / per base)	13.07 / 1.089
Data sources	ChIP-Seq
Aligned words	76

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (25)	0.714	0.803	0.637	0.756	0.707	0.824	2.906	4.292	74.77	138.854

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Methyl HT-SELEX, 1 experiments	median	0.813	0.781	0.696	0.68	0.615	0.615
Methyl HT-SELEX, 1 experiments	best	0.813	0.781	0.696	0.68	0.615	0.615

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF500-like {2.3.3.19} (TFClass)
TFClass ID	TFClass: 2.3.3.19.4
HGNC	HGNC:26673
MGI
EntrezGene (human)	GeneID:146050 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZSC29_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8IWY8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	1

PCM	ZSC29.H12CORE.0.P.B.pcm
PWM	ZSC29.H12CORE.0.P.B.pwm
PFM	ZSC29.H12CORE.0.P.B.pfm
Alignment	ZSC29.H12CORE.0.P.B.words.tsv
Threshold to P-value map	ZSC29.H12CORE.0.P.B.thr
Motif in other formats
JASPAR format	ZSC29.H12CORE.0.P.B_jaspar_format.txt
MEME format	ZSC29.H12CORE.0.P.B_meme_format.meme
Transfac format	ZSC29.H12CORE.0.P.B_transfac_format.txt
Homer format	ZSC29.H12CORE.0.P.B_homer_format_0.001.txt ZSC29.H12CORE.0.P.B_homer_format_0.0005.txt ZSC29.H12CORE.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	7.0	16.0	43.0	10.0
02	4.0	35.0	15.0	22.0
03	2.0	1.0	67.0	6.0
04	2.0	2.0	2.0	70.0
05	0.0	75.0	0.0	1.0
06	1.0	7.0	0.0	68.0
07	72.0	3.0	1.0	0.0
08	0.0	62.0	2.0	12.0
09	31.0	2.0	41.0	2.0
10	2.0	65.0	4.0	5.0
11	28.0	16.0	28.0	4.0
12	5.0	1.0	66.0	4.0

PFM

	A	C	G	T
01	0.092	0.211	0.566	0.132
02	0.053	0.461	0.197	0.289
03	0.026	0.013	0.882	0.079
04	0.026	0.026	0.026	0.921
05	0.0	0.987	0.0	0.013
06	0.013	0.092	0.0	0.895
07	0.947	0.039	0.013	0.0
08	0.0	0.816	0.026	0.158
09	0.408	0.026	0.539	0.026
10	0.026	0.855	0.053	0.066
11	0.368	0.211	0.368	0.053
12	0.066	0.013	0.868	0.053

PWM

	A	C	G	T
01	-0.91	-0.162	0.786	-0.594
02	-1.374	0.586	-0.222	0.139
03	-1.874	-2.266	1.221	-1.042
04	-1.874	-1.874	-1.874	1.264
05	-2.92	1.332	-2.92	-2.266
06	-2.266	-0.91	-2.92	1.235
07	1.292	-1.593	-2.266	-2.92
08	-2.92	1.145	-1.874	-0.429
09	0.468	-1.874	0.74	-1.874
10	-1.874	1.191	-1.374	-1.194
11	0.37	-0.162	0.37	-1.374
12	-1.194	-2.266	1.206	-1.374

Standard thresholds

P-value	Threshold
0.001	4.321665
0.0005	5.22556
0.0001	7.145635