MotifZSC23.H12CORE.0.M.C
Gene (human)ZSCAN23
(GeneCards)
Gene synonyms (human)ZNF390, ZNF453
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length18
ConsensusvRKGTGCTAATTACRhdn
GC content39.32%
Information content (bits; total / per base)19.989 / 1.11
Data sourcesMethyl-HT-SELEX
Aligned words1208

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Methyl HT-SELEX, 1 experiments median 0.617 0.62 0.572 0.569 0.549 0.546
best 0.617 0.62 0.572 0.569 0.549 0.546
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF24-like {2.3.3.10} (TFClass)
TFClass IDTFClass: 2.3.3.10.3
HGNCHGNC:21193
MGI
EntrezGene (human)GeneID:222696
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZSC23_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q3MJ62
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 1
PCM
ACGT
01198.5718.5153.5137.5
02878.7584.75158.7585.75
0344.031.0345.0788.0
04188.07.01003.010.0
0550.047.012.01099.0
066.010.01186.06.0
078.01081.0116.03.0
083.00.085.01120.0
091196.07.02.03.0
101152.01.052.03.0
113.04.087.01114.0
1210.031.089.01078.0
131088.012.077.031.0
1427.01064.088.029.0
15644.036.0489.039.0
16608.0251.0171.0178.0
17630.25148.25273.25156.25
18344.5315.5313.5234.5
PFM
ACGT
010.1640.5950.1270.114
020.7270.070.1310.071
030.0360.0260.2860.652
040.1560.0060.830.008
050.0410.0390.010.91
060.0050.0080.9820.005
070.0070.8950.0960.002
080.0020.00.070.927
090.990.0060.0020.002
100.9540.0010.0430.002
110.0020.0030.0720.922
120.0080.0260.0740.892
130.9010.010.0640.026
140.0220.8810.0730.024
150.5330.030.4050.032
160.5030.2080.1420.147
170.5220.1230.2260.129
180.2850.2610.260.194
PWM
ACGT
01-0.4170.863-0.671-0.78
021.064-1.256-0.638-1.244
03-1.893-2.2270.1320.955
04-0.47-3.5441.196-3.25
05-1.769-1.829-3.0931.287
06-3.665-3.251.364-3.665
07-3.4371.271-0.948-4.153
08-4.153-5.143-1.2531.306
091.372-3.544-4.388-4.153
101.335-4.696-1.731-4.153
11-4.153-3.963-1.231.301
12-3.25-2.227-1.2081.268
131.277-3.093-1.35-2.227
14-2.3571.255-1.219-2.29
150.754-2.0850.48-2.008
160.697-0.184-0.564-0.525
170.733-0.705-0.099-0.654
180.1310.0430.037-0.251
Standard thresholds
P-value Threshold
0.001 0.27491
0.0005 1.71296
0.0001 4.74861