ZSC22.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZSC22.H12INVIVO.0.P.C
Gene (human)	ZSCAN22 (GeneCards)
Gene synonyms (human)	HKR2, ZNF50
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	17
Consensus	dRnShGAdGGhGGMGGS
GC content	67.66%
Information content (bits; total / per base)	14.996 / 0.882
Data sources	ChIP-Seq
Aligned words	995

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.808	0.864	0.649	0.749	0.885	0.908	4.487	4.856	168.215	228.495

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.70
HGNC	HGNC:4929
MGI
EntrezGene (human)	GeneID:342945 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZSC22_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P10073 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZSC22.H12INVIVO.0.P.C.pcm
PWM	ZSC22.H12INVIVO.0.P.C.pwm
PFM	ZSC22.H12INVIVO.0.P.C.pfm
Alignment	ZSC22.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZSC22.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZSC22.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZSC22.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZSC22.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZSC22.H12INVIVO.0.P.C_homer_format_0.001.txt ZSC22.H12INVIVO.0.P.C_homer_format_0.0005.txt ZSC22.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	319.0	110.0	433.0	133.0
02	198.0	132.0	606.0	59.0
03	183.0	181.0	275.0	356.0
04	127.0	581.0	229.0	58.0
05	352.0	198.0	129.0	316.0
06	77.0	7.0	910.0	1.0
07	877.0	17.0	80.0	21.0
08	144.0	106.0	431.0	314.0
09	71.0	5.0	912.0	7.0
10	27.0	10.0	955.0	3.0
11	446.0	376.0	86.0	87.0
12	132.0	5.0	843.0	15.0
13	11.0	13.0	954.0	17.0
14	686.0	242.0	32.0	35.0
15	63.0	7.0	911.0	14.0
16	74.0	26.0	883.0	12.0
17	133.0	618.0	141.0	103.0

PFM

	A	C	G	T
01	0.321	0.111	0.435	0.134
02	0.199	0.133	0.609	0.059
03	0.184	0.182	0.276	0.358
04	0.128	0.584	0.23	0.058
05	0.354	0.199	0.13	0.318
06	0.077	0.007	0.915	0.001
07	0.881	0.017	0.08	0.021
08	0.145	0.107	0.433	0.316
09	0.071	0.005	0.917	0.007
10	0.027	0.01	0.96	0.003
11	0.448	0.378	0.086	0.087
12	0.133	0.005	0.847	0.015
13	0.011	0.013	0.959	0.017
14	0.689	0.243	0.032	0.035
15	0.063	0.007	0.916	0.014
16	0.074	0.026	0.887	0.012
17	0.134	0.621	0.142	0.104

PWM

	A	C	G	T
01	0.247	-0.807	0.551	-0.62
02	-0.226	-0.628	0.886	-1.417
03	-0.304	-0.315	0.1	0.356
04	-0.666	0.844	-0.082	-1.434
05	0.345	-0.226	-0.65	0.238
06	-1.157	-3.357	1.292	-4.521
07	1.255	-2.593	-1.12	-2.4
08	-0.542	-0.844	0.547	0.232
09	-1.237	-3.617	1.294	-3.357
10	-2.166	-3.062	1.34	-3.97
11	0.581	0.411	-1.049	-1.038
12	-0.628	-3.617	1.216	-2.706
13	-2.98	-2.834	1.339	-2.593
14	1.01	-0.027	-2.005	-1.92
15	-1.353	-3.357	1.293	-2.768
16	-1.196	-2.201	1.262	-2.904
17	-0.62	0.906	-0.562	-0.872

Standard thresholds

P-value	Threshold
0.001	3.08621
0.0005	4.21566
0.0001	6.58421