MotifZSC21.H12INVITRO.0.P.D
Gene (human)ZSCAN21
(GeneCards)
Gene synonyms (human)ZFP38, ZNF38
Gene (mouse)Zscan21
Gene synonyms (mouse)Zfp-38, Zfp38, Zipro1, Znf38
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length11
ConsensusdShMAGYACYb
GC content52.98%
Information content (bits; total / per base)9.218 / 0.838
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (6) 0.716 0.761 0.521 0.524 0.711 0.847 2.041 3.006 33.415 46.796
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.47
HGNCHGNC:13104
MGIMGI:99182
EntrezGene (human)GeneID:7589
(SSTAR profile)
EntrezGene (mouse)GeneID:22697
(SSTAR profile)
UniProt ID (human)ZSC21_HUMAN
UniProt ID (mouse)ZSC21_MOUSE
UniProt AC (human)Q9Y5A6
(TFClass)
UniProt AC (mouse)Q07231
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01477.0124.0172.0227.0
02126.0652.0141.081.0
03177.0364.049.0410.0
04219.0658.081.042.0
05967.04.06.023.0
0623.035.0903.039.0
0718.0665.021.0296.0
08857.049.011.083.0
0924.0928.033.015.0
1067.0416.06.0511.0
11100.0301.0209.0390.0
PFM
ACGT
010.4770.1240.1720.227
020.1260.6520.1410.081
030.1770.3640.0490.41
040.2190.6580.0810.042
050.9670.0040.0060.023
060.0230.0350.9030.039
070.0180.6650.0210.296
080.8570.0490.0110.083
090.0240.9280.0330.015
100.0670.4160.0060.511
110.10.3010.2090.39
PWM
ACGT
010.643-0.694-0.371-0.096
02-0.6780.954-0.567-1.113
03-0.3420.374-1.6020.492
04-0.1310.963-1.113-1.75
051.348-3.783-3.484-2.32
06-2.32-1.9251.279-1.821
07-2.5460.974-2.4050.168
081.227-1.602-2.985-1.089
09-2.2811.307-1.981-2.711
10-1.2980.506-3.4840.711
11-0.9060.184-0.1780.442
Standard thresholds
P-value Threshold
0.001 4.873485
0.0005 5.681565
0.0001 7.280945