MotifZSC16.H12INVITRO.0.PSM.A
Gene (human)ZSCAN16
(GeneCards)
Gene synonyms (human)ZNF392, ZNF435
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length19
ConsensusndnYGTTAACWGARCACYb
GC content43.8%
Information content (bits; total / per base)21.61 / 1.137
Data sourcesChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words2154

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (6) 0.821 0.852 0.741 0.773 0.834 0.867 3.574 3.706 179.096 250.108

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 3 experiments median 0.738 0.755 0.615 0.634 0.562 0.579
best 0.779 0.798 0.632 0.657 0.569 0.592
Methyl HT-SELEX, 1 experiments median 0.738 0.755 0.615 0.634 0.562 0.579
best 0.738 0.755 0.615 0.634 0.562 0.579
Non-Methyl HT-SELEX, 2 experiments median 0.688 0.703 0.592 0.607 0.552 0.564
best 0.779 0.798 0.632 0.657 0.569 0.592
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.15
HGNCHGNC:20813
MGI
EntrezGene (human)GeneID:80345
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZSC16_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q9H4T2
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 1
PCM
ACGT
01783.25501.25442.25427.25
021199.75296.75304.75352.75
03663.0343.0650.0498.0
0493.0303.061.01697.0
057.068.02079.00.0
062.058.01.02093.0
074.00.015.02135.0
081985.082.052.035.0
091974.072.030.078.0
102.02144.00.08.0
111596.0180.04.0374.0
12125.071.01924.034.0
132045.092.06.011.0
14822.0127.01180.025.0
159.02141.01.03.0
161386.0757.04.07.0
173.01431.01.0719.0
1849.01611.0106.0388.0
19237.25450.25338.251128.25
PFM
ACGT
010.3640.2330.2050.198
020.5570.1380.1410.164
030.3080.1590.3020.231
040.0430.1410.0280.788
050.0030.0320.9650.0
060.0010.0270.00.972
070.0020.00.0070.991
080.9220.0380.0240.016
090.9160.0330.0140.036
100.0010.9950.00.004
110.7410.0840.0020.174
120.0580.0330.8930.016
130.9490.0430.0030.005
140.3820.0590.5480.012
150.0040.9940.00.001
160.6430.3510.0020.003
170.0010.6640.00.334
180.0230.7480.0490.18
190.110.2090.1570.524
PWM
ACGT
010.374-0.071-0.196-0.23
020.799-0.593-0.567-0.421
030.207-0.4490.188-0.078
04-1.739-0.572-2.151.145
05-4.104-2.0451.348-5.641
06-4.927-2.199-5.2211.355
07-4.514-5.641-3.4641.375
081.302-1.862-2.305-2.684
091.296-1.989-2.829-1.911
10-4.9271.379-5.641-3.998
111.084-1.089-4.514-0.363
12-1.449-2.0031.271-2.711
131.332-1.75-4.223-3.734
140.422-1.4330.783-3.0
15-3.9021.378-5.221-4.699
160.9430.34-4.514-4.104
17-4.6990.975-5.2210.288
18-2.3621.093-1.611-0.326
19-0.815-0.178-0.4630.738
Standard thresholds
P-value Threshold
0.001 -1.86179
0.0005 -0.17974
0.0001 3.36496