ZSA5C.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZSA5C.H12INVITRO.0.P.D
Gene (human)	ZSCAN5C (GeneCards)
Gene synonyms (human)	ZSCAN5CP
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	17
Consensus	dGKGAGKbMWYdMRdvh
GC content	42.38%
Information content (bits; total / per base)	10.458 / 0.615
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (6)	0.846	0.875	0.758	0.78	0.838	0.857	3.498	3.559	73.423	104.921

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZSCAN5-like {2.3.3.5} (TFClass)
TFClass ID	TFClass: 2.3.3.5.3
HGNC	HGNC:34294
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	ZSA5C_HUMAN
UniProt ID (mouse)
UniProt AC (human)	A6NGD5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZSA5C.H12INVITRO.0.P.D.pcm
PWM	ZSA5C.H12INVITRO.0.P.D.pwm
PFM	ZSA5C.H12INVITRO.0.P.D.pfm
Alignment	ZSA5C.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZSA5C.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZSA5C.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZSA5C.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZSA5C.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZSA5C.H12INVITRO.0.P.D_homer_format_0.001.txt ZSA5C.H12INVITRO.0.P.D_homer_format_0.0005.txt ZSA5C.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	299.0	31.0	196.0	474.0
02	88.0	62.0	826.0	24.0
03	92.0	26.0	110.0	772.0
04	26.0	149.0	805.0	20.0
05	936.0	38.0	16.0	10.0
06	112.0	52.0	824.0	12.0
07	66.0	49.0	99.0	786.0
08	166.0	428.0	195.0	211.0
09	612.0	220.0	40.0	128.0
10	614.0	116.0	116.0	154.0
11	69.0	363.0	57.0	511.0
12	562.0	63.0	215.0	160.0
13	630.0	161.0	109.0	100.0
14	624.0	71.0	206.0	99.0
15	369.0	65.0	372.0	194.0
16	199.0	451.0	214.0	136.0
17	292.0	369.0	90.0	249.0

PFM

	A	C	G	T
01	0.299	0.031	0.196	0.474
02	0.088	0.062	0.826	0.024
03	0.092	0.026	0.11	0.772
04	0.026	0.149	0.805	0.02
05	0.936	0.038	0.016	0.01
06	0.112	0.052	0.824	0.012
07	0.066	0.049	0.099	0.786
08	0.166	0.428	0.195	0.211
09	0.612	0.22	0.04	0.128
10	0.614	0.116	0.116	0.154
11	0.069	0.363	0.057	0.511
12	0.562	0.063	0.215	0.16
13	0.63	0.161	0.109	0.1
14	0.624	0.071	0.206	0.099
15	0.369	0.065	0.372	0.194
16	0.199	0.451	0.214	0.136
17	0.292	0.369	0.09	0.249

PWM

	A	C	G	T
01	0.178	-2.04	-0.241	0.636
02	-1.032	-1.374	1.19	-2.281
03	-0.988	-2.206	-0.812	1.123
04	-2.206	-0.513	1.165	-2.45
05	1.315	-1.846	-2.653	-3.066
06	-0.795	-1.544	1.188	-2.909
07	-1.313	-1.602	-0.916	1.141
08	-0.406	0.535	-0.247	-0.168
09	0.891	-0.127	-1.797	-0.663
10	0.894	-0.76	-0.76	-0.48
11	-1.27	0.371	-1.455	0.711
12	0.806	-1.358	-0.15	-0.442
13	0.92	-0.436	-0.821	-0.906
14	0.911	-1.242	-0.192	-0.916
15	0.387	-1.328	0.395	-0.252
16	-0.226	0.587	-0.154	-0.603
17	0.154	0.387	-1.01	-0.004

Standard thresholds

P-value	Threshold
0.001	4.59731
0.0005	5.41101
0.0001	7.11591