ZSA5A.H12INVIVO.0.SM.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZSA5A.H12INVIVO.0.SM.D
Gene (human)	ZSCAN5A (GeneCards)
Gene synonyms (human)	ZNF495, ZSCAN5
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	19
Consensus	nhGTCCCYMCMCAAATMYb
GC content	54.65%
Information content (bits; total / per base)	20.652 / 1.087
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	9065

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	1.0	1.0	1.0	0.999	0.997	0.996
Overall, 2 experiments	best	1.0	1.0	1.0	1.0	0.998	0.997
Methyl HT-SELEX, 1 experiments	median	1.0	1.0	1.0	1.0	0.998	0.997
Methyl HT-SELEX, 1 experiments	best	1.0	1.0	1.0	1.0	0.998	0.997
Non-Methyl HT-SELEX, 1 experiments	median	1.0	1.0	0.999	0.999	0.996	0.995
Non-Methyl HT-SELEX, 1 experiments	best	1.0	1.0	0.999	0.999	0.996	0.995

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZSCAN5-like {2.3.3.5} (TFClass)
TFClass ID	TFClass: 2.3.3.5.1
HGNC	HGNC:23710
MGI
EntrezGene (human)	GeneID:79149 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZSA5A_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9BUG6 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	ZSA5A.H12INVIVO.0.SM.D.pcm
PWM	ZSA5A.H12INVIVO.0.SM.D.pwm
PFM	ZSA5A.H12INVIVO.0.SM.D.pfm
Alignment	ZSA5A.H12INVIVO.0.SM.D.words.tsv
Threshold to P-value map	ZSA5A.H12INVIVO.0.SM.D.thr
Motif in other formats
JASPAR format	ZSA5A.H12INVIVO.0.SM.D_jaspar_format.txt
MEME format	ZSA5A.H12INVIVO.0.SM.D_meme_format.meme
Transfac format	ZSA5A.H12INVIVO.0.SM.D_transfac_format.txt
Homer format	ZSA5A.H12INVIVO.0.SM.D_homer_format_0.001.txt ZSA5A.H12INVIVO.0.SM.D_homer_format_0.0005.txt ZSA5A.H12INVIVO.0.SM.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2211.25	2506.25	2431.25	1916.25
02	1000.0	3105.0	729.0	4231.0
03	368.0	360.0	7242.0	1095.0
04	227.0	203.0	650.0	7985.0
05	241.0	7670.0	819.0	335.0
06	65.0	8978.0	17.0	5.0
07	166.0	8609.0	25.0	265.0
08	343.0	5047.0	48.0	3627.0
09	2612.0	4923.0	189.0	1341.0
10	1143.0	7725.0	46.0	151.0
11	2190.0	5539.0	495.0	841.0
12	11.0	9034.0	2.0	18.0
13	9032.0	11.0	21.0	1.0
14	9045.0	15.0	1.0	4.0
15	8854.0	9.0	197.0	5.0
16	277.0	33.0	1757.0	6998.0
17	1703.0	6571.0	66.0	725.0
18	573.0	2574.0	803.0	5115.0
19	1525.5	3677.5	2004.5	1857.5

PFM

	A	C	G	T
01	0.244	0.276	0.268	0.211
02	0.11	0.343	0.08	0.467
03	0.041	0.04	0.799	0.121
04	0.025	0.022	0.072	0.881
05	0.027	0.846	0.09	0.037
06	0.007	0.99	0.002	0.001
07	0.018	0.95	0.003	0.029
08	0.038	0.557	0.005	0.4
09	0.288	0.543	0.021	0.148
10	0.126	0.852	0.005	0.017
11	0.242	0.611	0.055	0.093
12	0.001	0.997	0.0	0.002
13	0.996	0.001	0.002	0.0
14	0.998	0.002	0.0	0.0
15	0.977	0.001	0.022	0.001
16	0.031	0.004	0.194	0.772
17	0.188	0.725	0.007	0.08
18	0.063	0.284	0.089	0.564
19	0.168	0.406	0.221	0.205

PWM

	A	C	G	T
01	-0.025	0.101	0.07	-0.168
02	-0.817	0.315	-1.132	0.624
03	-1.813	-1.834	1.161	-0.726
04	-2.292	-2.403	-1.246	1.259
05	-2.233	1.218	-1.016	-1.906
06	-3.518	1.376	-4.768	-5.742
07	-2.601	1.334	-4.421	-2.139
08	-1.883	0.8	-3.809	0.47
09	0.142	0.775	-2.473	-0.524
10	-0.683	1.226	-3.85	-2.695
11	-0.034	0.893	-1.518	-0.99
12	-5.141	1.382	-6.273	-4.717
13	1.382	-5.141	-4.579	-6.54
14	1.383	-4.877	-6.54	-5.89
15	1.362	-5.304	-2.432	-5.742
16	-2.095	-4.164	-0.254	1.127
17	-0.285	1.064	-3.503	-1.138
18	-1.372	0.127	-1.036	0.813
19	-0.395	0.484	-0.123	-0.199

Standard thresholds

P-value	Threshold
0.001	-1.58789
0.0005	0.12296
0.0001	3.70771