ZNF90.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF90.H12RSNP.0.P.D
Gene (human)	ZNF90 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	AYGCCTCTCTGATTATTCACCCA
GC content	45.51%
Information content (bits; total / per base)	40.658 / 1.768
Data sources	ChIP-Seq
Aligned words	109

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.906	0.906	0.912	0.912	0.902	0.902	19.569	19.569	65.553	65.553

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.184
HGNC	HGNC:13165
MGI
EntrezGene (human)	GeneID:7643 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF90_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q03938 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF90.H12RSNP.0.P.D.pcm
PWM	ZNF90.H12RSNP.0.P.D.pwm
PFM	ZNF90.H12RSNP.0.P.D.pfm
Alignment	ZNF90.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZNF90.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZNF90.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZNF90.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZNF90.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZNF90.H12RSNP.0.P.D_homer_format_0.001.txt ZNF90.H12RSNP.0.P.D_homer_format_0.0005.txt ZNF90.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	108.0	1.0	0.0	0.0
02	0.0	54.0	2.0	53.0
03	2.0	1.0	104.0	2.0
04	2.0	105.0	0.0	2.0
05	0.0	108.0	0.0	1.0
06	0.0	1.0	0.0	108.0
07	0.0	95.0	11.0	3.0
08	1.0	10.0	0.0	98.0
09	1.0	108.0	0.0	0.0
10	0.0	0.0	0.0	109.0
11	2.0	1.0	106.0	0.0
12	106.0	0.0	2.0	1.0
13	0.0	2.0	0.0	107.0
14	1.0	0.0	0.0	108.0
15	109.0	0.0	0.0	0.0
16	0.0	0.0	0.0	109.0
17	5.0	0.0	1.0	103.0
18	0.0	108.0	1.0	0.0
19	105.0	1.0	2.0	1.0
20	0.0	104.0	0.0	5.0
21	0.0	104.0	0.0	5.0
22	0.0	107.0	1.0	1.0
23	107.0	0.0	1.0	1.0

PFM

	A	C	G	T
01	0.991	0.009	0.0	0.0
02	0.0	0.495	0.018	0.486
03	0.018	0.009	0.954	0.018
04	0.018	0.963	0.0	0.018
05	0.0	0.991	0.0	0.009
06	0.0	0.009	0.0	0.991
07	0.0	0.872	0.101	0.028
08	0.009	0.092	0.0	0.899
09	0.009	0.991	0.0	0.0
10	0.0	0.0	0.0	1.0
11	0.018	0.009	0.972	0.0
12	0.972	0.0	0.018	0.009
13	0.0	0.018	0.0	0.982
14	0.009	0.0	0.0	0.991
15	1.0	0.0	0.0	0.0
16	0.0	0.0	0.0	1.0
17	0.046	0.0	0.009	0.945
18	0.0	0.991	0.009	0.0
19	0.963	0.009	0.018	0.009
20	0.0	0.954	0.0	0.046
21	0.0	0.954	0.0	0.046
22	0.0	0.982	0.009	0.009
23	0.982	0.0	0.009	0.009

PWM

	A	C	G	T
01	1.346	-2.571	-3.188	-3.188
02	-3.188	0.663	-2.193	0.645
03	-2.193	-2.571	1.308	-2.193
04	-2.193	1.318	-3.188	-2.193
05	-3.188	1.346	-3.188	-2.571
06	-3.188	-2.571	-3.188	1.346
07	-3.188	1.219	-0.848	-1.919
08	-2.571	-0.934	-3.188	1.25
09	-2.571	1.346	-3.188	-3.188
10	-3.188	-3.188	-3.188	1.355
11	-2.193	-2.571	1.327	-3.188
12	1.327	-3.188	-2.193	-2.571
13	-3.188	-2.193	-3.188	1.337
14	-2.571	-3.188	-3.188	1.346
15	1.355	-3.188	-3.188	-3.188
16	-3.188	-3.188	-3.188	1.355
17	-1.527	-3.188	-2.571	1.299
18	-3.188	1.346	-2.571	-3.188
19	1.318	-2.571	-2.193	-2.571
20	-3.188	1.308	-3.188	-1.527
21	-3.188	1.308	-3.188	-1.527
22	-3.188	1.337	-2.571	-2.571
23	1.337	-3.188	-2.571	-2.571

Standard thresholds

P-value	Threshold
0.001	-10.29239
0.0005	-8.39319
0.0001	-4.20169