MotifZNF90.H12INVITRO.0.P.D
Gene (human)ZNF90
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length23
ConsensusAYGCCTCTCTGATTATTCACCCA
GC content45.51%
Information content (bits; total / per base)40.658 / 1.768
Data sourcesChIP-Seq
Aligned words109

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (2) 0.906 0.906 0.912 0.912 0.902 0.902 19.569 19.569 65.553 65.553
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.184
HGNCHGNC:13165
MGI
EntrezGene (human)GeneID:7643
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZNF90_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q03938
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01108.01.00.00.0
020.054.02.053.0
032.01.0104.02.0
042.0105.00.02.0
050.0108.00.01.0
060.01.00.0108.0
070.095.011.03.0
081.010.00.098.0
091.0108.00.00.0
100.00.00.0109.0
112.01.0106.00.0
12106.00.02.01.0
130.02.00.0107.0
141.00.00.0108.0
15109.00.00.00.0
160.00.00.0109.0
175.00.01.0103.0
180.0108.01.00.0
19105.01.02.01.0
200.0104.00.05.0
210.0104.00.05.0
220.0107.01.01.0
23107.00.01.01.0
PFM
ACGT
010.9910.0090.00.0
020.00.4950.0180.486
030.0180.0090.9540.018
040.0180.9630.00.018
050.00.9910.00.009
060.00.0090.00.991
070.00.8720.1010.028
080.0090.0920.00.899
090.0090.9910.00.0
100.00.00.01.0
110.0180.0090.9720.0
120.9720.00.0180.009
130.00.0180.00.982
140.0090.00.00.991
151.00.00.00.0
160.00.00.01.0
170.0460.00.0090.945
180.00.9910.0090.0
190.9630.0090.0180.009
200.00.9540.00.046
210.00.9540.00.046
220.00.9820.0090.009
230.9820.00.0090.009
PWM
ACGT
011.346-2.571-3.188-3.188
02-3.1880.663-2.1930.645
03-2.193-2.5711.308-2.193
04-2.1931.318-3.188-2.193
05-3.1881.346-3.188-2.571
06-3.188-2.571-3.1881.346
07-3.1881.219-0.848-1.919
08-2.571-0.934-3.1881.25
09-2.5711.346-3.188-3.188
10-3.188-3.188-3.1881.355
11-2.193-2.5711.327-3.188
121.327-3.188-2.193-2.571
13-3.188-2.193-3.1881.337
14-2.571-3.188-3.1881.346
151.355-3.188-3.188-3.188
16-3.188-3.188-3.1881.355
17-1.527-3.188-2.5711.299
18-3.1881.346-2.571-3.188
191.318-2.571-2.193-2.571
20-3.1881.308-3.188-1.527
21-3.1881.308-3.188-1.527
22-3.1881.337-2.571-2.571
231.337-3.188-2.571-2.571
Standard thresholds
P-value Threshold
0.001 -10.29239
0.0005 -8.39319
0.0001 -4.20169