ZNF85.H12RSNP.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF85.H12RSNP.1.P.D
Gene (human)	ZNF85 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	20
Consensus	dRRMRdvKGMWGdAATCYbh
GC content	40.83%
Information content (bits; total / per base)	14.564 / 0.728
Data sources	ChIP-Seq
Aligned words	1056

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.869	0.971	0.823	0.969	0.897	0.968	6.148	9.054	251.569	413.032

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.198
HGNC	HGNC:13160
MGI
EntrezGene (human)	GeneID:7639 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF85_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q03923 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF85.H12RSNP.1.P.D.pcm
PWM	ZNF85.H12RSNP.1.P.D.pwm
PFM	ZNF85.H12RSNP.1.P.D.pfm
Alignment	ZNF85.H12RSNP.1.P.D.words.tsv
Threshold to P-value map	ZNF85.H12RSNP.1.P.D.thr
Motif in other formats
JASPAR format	ZNF85.H12RSNP.1.P.D_jaspar_format.txt
MEME format	ZNF85.H12RSNP.1.P.D_meme_format.meme
Transfac format	ZNF85.H12RSNP.1.P.D_transfac_format.txt
Homer format	ZNF85.H12RSNP.1.P.D_homer_format_0.001.txt ZNF85.H12RSNP.1.P.D_homer_format_0.0005.txt ZNF85.H12RSNP.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	599.0	108.0	122.0	227.0
02	200.0	91.0	690.0	75.0
03	656.0	116.0	201.0	83.0
04	648.0	196.0	132.0	80.0
05	574.0	89.0	313.0	80.0
06	543.0	80.0	132.0	301.0
07	197.0	541.0	200.0	118.0
08	126.0	39.0	155.0	736.0
09	190.0	9.0	846.0	11.0
10	571.0	411.0	42.0	32.0
11	537.0	37.0	51.0	431.0
12	25.0	7.0	1015.0	9.0
13	130.0	94.0	377.0	455.0
14	1005.0	22.0	19.0	10.0
15	893.0	132.0	15.0	16.0
16	17.0	55.0	36.0	948.0
17	35.0	956.0	26.0	39.0
18	157.0	182.0	17.0	700.0
19	132.0	400.0	162.0	362.0
20	185.0	380.0	127.0	364.0

PFM

	A	C	G	T
01	0.567	0.102	0.116	0.215
02	0.189	0.086	0.653	0.071
03	0.621	0.11	0.19	0.079
04	0.614	0.186	0.125	0.076
05	0.544	0.084	0.296	0.076
06	0.514	0.076	0.125	0.285
07	0.187	0.512	0.189	0.112
08	0.119	0.037	0.147	0.697
09	0.18	0.009	0.801	0.01
10	0.541	0.389	0.04	0.03
11	0.509	0.035	0.048	0.408
12	0.024	0.007	0.961	0.009
13	0.123	0.089	0.357	0.431
14	0.952	0.021	0.018	0.009
15	0.846	0.125	0.014	0.015
16	0.016	0.052	0.034	0.898
17	0.033	0.905	0.025	0.037
18	0.149	0.172	0.016	0.663
19	0.125	0.379	0.153	0.343
20	0.175	0.36	0.12	0.345

PWM

	A	C	G	T
01	0.816	-0.884	-0.764	-0.15
02	-0.276	-1.053	0.957	-1.242
03	0.906	-0.814	-0.271	-1.143
04	0.894	-0.296	-0.687	-1.179
05	0.773	-1.075	0.169	-1.179
06	0.718	-1.179	-0.687	0.13
07	-0.291	0.714	-0.276	-0.797
08	-0.733	-1.875	-0.528	1.021
09	-0.326	-3.208	1.16	-3.038
10	0.768	0.44	-1.804	-2.064
11	0.707	-1.926	-1.617	0.488
12	-2.296	-3.415	1.342	-3.208
13	-0.702	-1.021	0.354	0.542
14	1.332	-2.415	-2.55	-3.119
15	1.214	-0.687	-2.765	-2.707
16	-2.652	-1.544	-1.952	1.274
17	-1.979	1.282	-2.26	-1.875
18	-0.515	-0.369	-2.652	0.971
19	-0.687	0.413	-0.484	0.314
20	-0.353	0.362	-0.725	0.319

Standard thresholds

P-value	Threshold
0.001	3.43196
0.0005	4.48236
0.0001	6.69296