MotifZNF85.H12INVITRO.1.P.D
Gene (human)ZNF85
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length20
ConsensusdRRMRdvKGMWGdAATCYbh
GC content40.83%
Information content (bits; total / per base)14.564 / 0.728
Data sourcesChIP-Seq
Aligned words1056

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (9) 0.869 0.971 0.823 0.969 0.897 0.968 6.148 9.054 251.569 413.032
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.198
HGNCHGNC:13160
MGI
EntrezGene (human)GeneID:7639
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZNF85_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q03923
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01599.0108.0122.0227.0
02200.091.0690.075.0
03656.0116.0201.083.0
04648.0196.0132.080.0
05574.089.0313.080.0
06543.080.0132.0301.0
07197.0541.0200.0118.0
08126.039.0155.0736.0
09190.09.0846.011.0
10571.0411.042.032.0
11537.037.051.0431.0
1225.07.01015.09.0
13130.094.0377.0455.0
141005.022.019.010.0
15893.0132.015.016.0
1617.055.036.0948.0
1735.0956.026.039.0
18157.0182.017.0700.0
19132.0400.0162.0362.0
20185.0380.0127.0364.0
PFM
ACGT
010.5670.1020.1160.215
020.1890.0860.6530.071
030.6210.110.190.079
040.6140.1860.1250.076
050.5440.0840.2960.076
060.5140.0760.1250.285
070.1870.5120.1890.112
080.1190.0370.1470.697
090.180.0090.8010.01
100.5410.3890.040.03
110.5090.0350.0480.408
120.0240.0070.9610.009
130.1230.0890.3570.431
140.9520.0210.0180.009
150.8460.1250.0140.015
160.0160.0520.0340.898
170.0330.9050.0250.037
180.1490.1720.0160.663
190.1250.3790.1530.343
200.1750.360.120.345
PWM
ACGT
010.816-0.884-0.764-0.15
02-0.276-1.0530.957-1.242
030.906-0.814-0.271-1.143
040.894-0.296-0.687-1.179
050.773-1.0750.169-1.179
060.718-1.179-0.6870.13
07-0.2910.714-0.276-0.797
08-0.733-1.875-0.5281.021
09-0.326-3.2081.16-3.038
100.7680.44-1.804-2.064
110.707-1.926-1.6170.488
12-2.296-3.4151.342-3.208
13-0.702-1.0210.3540.542
141.332-2.415-2.55-3.119
151.214-0.687-2.765-2.707
16-2.652-1.544-1.9521.274
17-1.9791.282-2.26-1.875
18-0.515-0.369-2.6520.971
19-0.6870.413-0.4840.314
20-0.3530.362-0.7250.319
Standard thresholds
P-value Threshold
0.001 3.43196
0.0005 4.48236
0.0001 6.69296