MotifZNF85.H12INVITRO.0.P.D
Gene (human)ZNF85
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length13
ConsensusKGMWGdAATCYbh
GC content40.11%
Information content (bits; total / per base)12.413 / 0.955
Data sourcesChIP-Seq
Aligned words999

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (9) 0.873 0.958 0.823 0.944 0.874 0.94 4.091 5.069 239.886 385.886
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.198
HGNCHGNC:13160
MGI
EntrezGene (human)GeneID:7639
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZNF85_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q03923
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01110.045.0122.0722.0
02168.07.0814.010.0
03571.0373.027.028.0
04513.054.049.0383.0
0540.05.0946.08.0
06129.085.0346.0439.0
07973.014.03.09.0
08837.0137.011.014.0
096.041.016.0936.0
1014.0931.018.036.0
11132.0161.011.0695.0
12101.0388.0129.0381.0
13157.0365.0111.0366.0
PFM
ACGT
010.110.0450.1220.723
020.1680.0070.8150.01
030.5720.3730.0270.028
040.5140.0540.0490.383
050.040.0050.9470.008
060.1290.0850.3460.439
070.9740.0140.0030.009
080.8380.1370.0110.014
090.0060.0410.0160.937
100.0140.9320.0180.036
110.1320.1610.0110.696
120.1010.3880.1290.381
130.1570.3650.1110.366
PWM
ACGT
01-0.811-1.683-0.7091.057
02-0.393-3.3611.177-3.065
030.8230.399-2.17-2.135
040.716-1.507-1.6010.425
05-1.796-3.6211.327-3.252
06-0.654-1.0650.3240.561
071.355-2.772-3.974-3.155
081.205-0.595-2.984-2.772
09-3.483-1.773-2.6521.316
10-2.7721.311-2.545-1.897
11-0.632-0.435-2.9841.019
12-0.8950.438-0.6540.42
13-0.460.377-0.8020.38
Standard thresholds
P-value Threshold
0.001 4.00941
0.0005 5.02441
0.0001 7.121565