ZNF81.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF81.H12INVITRO.0.P.D
Gene (human)	ZNF81 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	19
Consensus	RGTACAACCACTWTGGAAA
GC content	40.32%
Information content (bits; total / per base)	29.549 / 1.555
Data sources	ChIP-Seq
Aligned words	917

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.991	0.994	0.989	0.991	0.991	0.993	14.048	14.21	498.501	530.367

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF81-like {2.3.3.68} (TFClass)
TFClass ID	TFClass: 2.3.3.68.1
HGNC	HGNC:13156
MGI
EntrezGene (human)	GeneID:347344 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF81_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P51508 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF81.H12INVITRO.0.P.D.pcm
PWM	ZNF81.H12INVITRO.0.P.D.pwm
PFM	ZNF81.H12INVITRO.0.P.D.pfm
Alignment	ZNF81.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZNF81.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZNF81.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZNF81.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZNF81.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZNF81.H12INVITRO.0.P.D_homer_format_0.001.txt ZNF81.H12INVITRO.0.P.D_homer_format_0.0005.txt ZNF81.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	382.0	0.0	529.0	6.0
02	0.0	1.0	916.0	0.0
03	1.0	3.0	1.0	912.0
04	695.0	14.0	193.0	15.0
05	10.0	810.0	19.0	78.0
06	818.0	49.0	29.0	21.0
07	915.0	0.0	2.0	0.0
08	1.0	915.0	1.0	0.0
09	0.0	868.0	0.0	49.0
10	907.0	0.0	10.0	0.0
11	12.0	796.0	43.0	66.0
12	4.0	16.0	5.0	892.0
13	420.0	38.0	85.0	374.0
14	34.0	54.0	10.0	819.0
15	169.0	4.0	737.0	7.0
16	68.0	0.0	849.0	0.0
17	917.0	0.0	0.0	0.0
18	900.0	1.0	16.0	0.0
19	895.0	2.0	9.0	11.0

PFM

	A	C	G	T
01	0.417	0.0	0.577	0.007
02	0.0	0.001	0.999	0.0
03	0.001	0.003	0.001	0.995
04	0.758	0.015	0.21	0.016
05	0.011	0.883	0.021	0.085
06	0.892	0.053	0.032	0.023
07	0.998	0.0	0.002	0.0
08	0.001	0.998	0.001	0.0
09	0.0	0.947	0.0	0.053
10	0.989	0.0	0.011	0.0
11	0.013	0.868	0.047	0.072
12	0.004	0.017	0.005	0.973
13	0.458	0.041	0.093	0.408
14	0.037	0.059	0.011	0.893
15	0.184	0.004	0.804	0.008
16	0.074	0.0	0.926	0.0
17	1.0	0.0	0.0	0.0
18	0.981	0.001	0.017	0.0
19	0.976	0.002	0.01	0.012

PWM

	A	C	G	T
01	0.508	-4.908	0.832	-3.4
02	-4.908	-4.447	1.38	-4.908
03	-4.447	-3.894	-4.447	1.375
04	1.104	-2.688	-0.171	-2.626
05	-2.982	1.257	-2.412	-1.064
06	1.267	-1.516	-2.018	-2.32
07	1.379	-4.908	-4.132	-4.908
08	-4.447	1.379	-4.447	-4.908
09	-4.908	1.326	-4.908	-1.516
10	1.37	-4.908	-2.982	-4.908
11	-2.824	1.24	-1.642	-1.227
12	-3.701	-2.568	-3.539	1.353
13	0.602	-1.761	-0.98	0.487
14	-1.867	-1.422	-2.982	1.268
15	-0.302	-3.701	1.163	-3.278
16	-1.198	-4.908	1.304	-4.908
17	1.381	-4.908	-4.908	-4.908
18	1.362	-4.447	-2.568	-4.908
19	1.357	-4.132	-3.071	-2.9

Standard thresholds

P-value	Threshold
0.001	-8.55299
0.0005	-6.50844
0.0001	-2.13664