ZNF8.H12RSNP.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF8.H12RSNP.1.P.D
Gene (human)	ZNF8 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf8
Gene synonyms (mouse)	Zfp128
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	22
Consensus	TGTGGTAYATCCATWYARTGGA
GC content	39.33%
Information content (bits; total / per base)	28.791 / 1.309
Data sources	ChIP-Seq
Aligned words	417

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (15)	0.734	0.934	0.714	0.934	0.668	0.926	7.416	13.596	60.0	552.959

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.29
HGNC	HGNC:13154
MGI	MGI:2389445
EntrezGene (human)	GeneID:7554 (SSTAR profile)
EntrezGene (mouse)	GeneID:243833 (SSTAR profile)
UniProt ID (human)	ZNF8_HUMAN
UniProt ID (mouse)	ZNF8_MOUSE
UniProt AC (human)	P17098 (TFClass)
UniProt AC (mouse)	Q8BGV5 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF8.H12RSNP.1.P.D.pcm
PWM	ZNF8.H12RSNP.1.P.D.pwm
PFM	ZNF8.H12RSNP.1.P.D.pfm
Alignment	ZNF8.H12RSNP.1.P.D.words.tsv
Threshold to P-value map	ZNF8.H12RSNP.1.P.D.thr
Motif in other formats
JASPAR format	ZNF8.H12RSNP.1.P.D_jaspar_format.txt
MEME format	ZNF8.H12RSNP.1.P.D_meme_format.meme
Transfac format	ZNF8.H12RSNP.1.P.D_transfac_format.txt
Homer format	ZNF8.H12RSNP.1.P.D_homer_format_0.001.txt ZNF8.H12RSNP.1.P.D_homer_format_0.0005.txt ZNF8.H12RSNP.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	16.0	22.0	15.0	364.0
02	63.0	13.0	338.0	3.0
03	5.0	13.0	1.0	398.0
04	1.0	0.0	414.0	2.0
05	4.0	1.0	411.0	1.0
06	8.0	19.0	2.0	388.0
07	411.0	3.0	2.0	1.0
08	8.0	124.0	6.0	279.0
09	341.0	9.0	67.0	0.0
10	14.0	19.0	10.0	374.0
11	53.0	345.0	9.0	10.0
12	6.0	319.0	0.0	92.0
13	399.0	4.0	6.0	8.0
14	7.0	59.0	15.0	336.0
15	300.0	15.0	49.0	53.0
16	33.0	326.0	9.0	49.0
17	349.0	44.0	17.0	7.0
18	318.0	11.0	70.0	18.0
19	20.0	29.0	24.0	344.0
20	39.0	5.0	359.0	14.0
21	33.0	7.0	372.0	5.0
22	385.0	9.0	16.0	7.0

PFM

	A	C	G	T
01	0.038	0.053	0.036	0.873
02	0.151	0.031	0.811	0.007
03	0.012	0.031	0.002	0.954
04	0.002	0.0	0.993	0.005
05	0.01	0.002	0.986	0.002
06	0.019	0.046	0.005	0.93
07	0.986	0.007	0.005	0.002
08	0.019	0.297	0.014	0.669
09	0.818	0.022	0.161	0.0
10	0.034	0.046	0.024	0.897
11	0.127	0.827	0.022	0.024
12	0.014	0.765	0.0	0.221
13	0.957	0.01	0.014	0.019
14	0.017	0.141	0.036	0.806
15	0.719	0.036	0.118	0.127
16	0.079	0.782	0.022	0.118
17	0.837	0.106	0.041	0.017
18	0.763	0.026	0.168	0.043
19	0.048	0.07	0.058	0.825
20	0.094	0.012	0.861	0.034
21	0.079	0.017	0.892	0.012
22	0.923	0.022	0.038	0.017

PWM

	A	C	G	T
01	-1.798	-1.504	-1.857	1.24
02	-0.494	-1.986	1.166	-3.155
03	-2.788	-1.986	-3.742	1.329
04	-3.742	-4.25	1.368	-3.406
05	-2.955	-3.742	1.361	-3.742
06	-2.409	-1.64	-3.406	1.304
07	1.361	-3.155	-3.406	-3.742
08	-2.409	0.171	-2.645	0.975
09	1.175	-2.309	-0.434	-4.25
10	-1.92	-1.64	-2.218	1.267
11	-0.663	1.187	-2.309	-2.218
12	-2.645	1.109	-4.25	-0.123
13	1.332	-2.955	-2.645	-2.409
14	-2.52	-0.558	-1.857	1.16
15	1.048	-1.857	-0.739	-0.663
16	-1.12	1.13	-2.309	-0.739
17	1.198	-0.843	-1.743	-2.52
18	1.106	-2.135	-0.391	-1.69
19	-1.593	-1.243	-1.422	1.184
20	-0.96	-2.788	1.226	-1.92
21	-1.12	-2.52	1.262	-2.788
22	1.296	-2.309	-1.798	-2.52

Standard thresholds

P-value	Threshold
0.001	-3.69519
0.0005	-2.07409
0.0001	1.40101