Motif | ZNF8.H12INVIVO.1.P.B |
Gene (human) | ZNF8 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Znf8 |
Gene synonyms (mouse) | Zfp128 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif | ZNF8.H12INVIVO.1.P.B |
Gene (human) | ZNF8 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Znf8 |
Gene synonyms (mouse) | Zfp128 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif length | 22 |
Consensus | TGTGGTAYATCCATWYARTGGA |
GC content | 39.33% |
Information content (bits; total / per base) | 28.791 / 1.309 |
Data sources | ChIP-Seq |
Aligned words | 417 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 3 (15) | 0.734 | 0.934 | 0.714 | 0.934 | 0.668 | 0.926 | 7.416 | 13.596 | 60.0 | 552.959 |
TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
TF class | C2H2 zinc finger factors {2.3} (TFClass) |
TF family | Multiple dispersed zinc fingers {2.3.4} (TFClass) |
TF subfamily | Unclassified {2.3.4.0} (TFClass) |
TFClass ID | TFClass: 2.3.4.0.29 |
HGNC | HGNC:13154 |
MGI | MGI:2389445 |
EntrezGene (human) | GeneID:7554 (SSTAR profile) |
EntrezGene (mouse) | GeneID:243833 (SSTAR profile) |
UniProt ID (human) | ZNF8_HUMAN |
UniProt ID (mouse) | ZNF8_MOUSE |
UniProt AC (human) | P17098 (TFClass) |
UniProt AC (mouse) | Q8BGV5 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 3 human, 0 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 0 |
PCM | ZNF8.H12INVIVO.1.P.B.pcm |
PWM | ZNF8.H12INVIVO.1.P.B.pwm |
PFM | ZNF8.H12INVIVO.1.P.B.pfm |
Alignment | ZNF8.H12INVIVO.1.P.B.words.tsv |
Threshold to P-value map | ZNF8.H12INVIVO.1.P.B.thr |
Motif in other formats | |
JASPAR format | ZNF8.H12INVIVO.1.P.B_jaspar_format.txt |
MEME format | ZNF8.H12INVIVO.1.P.B_meme_format.meme |
Transfac format | ZNF8.H12INVIVO.1.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 16.0 | 22.0 | 15.0 | 364.0 |
02 | 63.0 | 13.0 | 338.0 | 3.0 |
03 | 5.0 | 13.0 | 1.0 | 398.0 |
04 | 1.0 | 0.0 | 414.0 | 2.0 |
05 | 4.0 | 1.0 | 411.0 | 1.0 |
06 | 8.0 | 19.0 | 2.0 | 388.0 |
07 | 411.0 | 3.0 | 2.0 | 1.0 |
08 | 8.0 | 124.0 | 6.0 | 279.0 |
09 | 341.0 | 9.0 | 67.0 | 0.0 |
10 | 14.0 | 19.0 | 10.0 | 374.0 |
11 | 53.0 | 345.0 | 9.0 | 10.0 |
12 | 6.0 | 319.0 | 0.0 | 92.0 |
13 | 399.0 | 4.0 | 6.0 | 8.0 |
14 | 7.0 | 59.0 | 15.0 | 336.0 |
15 | 300.0 | 15.0 | 49.0 | 53.0 |
16 | 33.0 | 326.0 | 9.0 | 49.0 |
17 | 349.0 | 44.0 | 17.0 | 7.0 |
18 | 318.0 | 11.0 | 70.0 | 18.0 |
19 | 20.0 | 29.0 | 24.0 | 344.0 |
20 | 39.0 | 5.0 | 359.0 | 14.0 |
21 | 33.0 | 7.0 | 372.0 | 5.0 |
22 | 385.0 | 9.0 | 16.0 | 7.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.038 | 0.053 | 0.036 | 0.873 |
02 | 0.151 | 0.031 | 0.811 | 0.007 |
03 | 0.012 | 0.031 | 0.002 | 0.954 |
04 | 0.002 | 0.0 | 0.993 | 0.005 |
05 | 0.01 | 0.002 | 0.986 | 0.002 |
06 | 0.019 | 0.046 | 0.005 | 0.93 |
07 | 0.986 | 0.007 | 0.005 | 0.002 |
08 | 0.019 | 0.297 | 0.014 | 0.669 |
09 | 0.818 | 0.022 | 0.161 | 0.0 |
10 | 0.034 | 0.046 | 0.024 | 0.897 |
11 | 0.127 | 0.827 | 0.022 | 0.024 |
12 | 0.014 | 0.765 | 0.0 | 0.221 |
13 | 0.957 | 0.01 | 0.014 | 0.019 |
14 | 0.017 | 0.141 | 0.036 | 0.806 |
15 | 0.719 | 0.036 | 0.118 | 0.127 |
16 | 0.079 | 0.782 | 0.022 | 0.118 |
17 | 0.837 | 0.106 | 0.041 | 0.017 |
18 | 0.763 | 0.026 | 0.168 | 0.043 |
19 | 0.048 | 0.07 | 0.058 | 0.825 |
20 | 0.094 | 0.012 | 0.861 | 0.034 |
21 | 0.079 | 0.017 | 0.892 | 0.012 |
22 | 0.923 | 0.022 | 0.038 | 0.017 |
A | C | G | T | |
---|---|---|---|---|
01 | -1.798 | -1.504 | -1.857 | 1.24 |
02 | -0.494 | -1.986 | 1.166 | -3.155 |
03 | -2.788 | -1.986 | -3.742 | 1.329 |
04 | -3.742 | -4.25 | 1.368 | -3.406 |
05 | -2.955 | -3.742 | 1.361 | -3.742 |
06 | -2.409 | -1.64 | -3.406 | 1.304 |
07 | 1.361 | -3.155 | -3.406 | -3.742 |
08 | -2.409 | 0.171 | -2.645 | 0.975 |
09 | 1.175 | -2.309 | -0.434 | -4.25 |
10 | -1.92 | -1.64 | -2.218 | 1.267 |
11 | -0.663 | 1.187 | -2.309 | -2.218 |
12 | -2.645 | 1.109 | -4.25 | -0.123 |
13 | 1.332 | -2.955 | -2.645 | -2.409 |
14 | -2.52 | -0.558 | -1.857 | 1.16 |
15 | 1.048 | -1.857 | -0.739 | -0.663 |
16 | -1.12 | 1.13 | -2.309 | -0.739 |
17 | 1.198 | -0.843 | -1.743 | -2.52 |
18 | 1.106 | -2.135 | -0.391 | -1.69 |
19 | -1.593 | -1.243 | -1.422 | 1.184 |
20 | -0.96 | -2.788 | 1.226 | -1.92 |
21 | -1.12 | -2.52 | 1.262 | -2.788 |
22 | 1.296 | -2.309 | -1.798 | -2.52 |
P-value | Threshold |
---|---|
0.001 | -3.69519 |
0.0005 | -2.07409 |
0.0001 | 1.40101 |