MotifZNF8.H12INVITRO.1.P.D
Gene (human)ZNF8
(GeneCards)
Gene synonyms (human)
Gene (mouse)Znf8
Gene synonyms (mouse)Zfp128
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length22
ConsensusTGTGGTAYATCCATWYARTGGA
GC content39.33%
Information content (bits; total / per base)28.791 / 1.309
Data sourcesChIP-Seq
Aligned words417

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 3 (15) 0.734 0.934 0.714 0.934 0.668 0.926 7.416 13.596 60.0 552.959
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMultiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamilyUnclassified {2.3.4.0} (TFClass)
TFClass IDTFClass: 2.3.4.0.29
HGNCHGNC:13154
MGIMGI:2389445
EntrezGene (human)GeneID:7554
(SSTAR profile)
EntrezGene (mouse)GeneID:243833
(SSTAR profile)
UniProt ID (human)ZNF8_HUMAN
UniProt ID (mouse)ZNF8_MOUSE
UniProt AC (human)P17098
(TFClass)
UniProt AC (mouse)Q8BGV5
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 3 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0116.022.015.0364.0
0263.013.0338.03.0
035.013.01.0398.0
041.00.0414.02.0
054.01.0411.01.0
068.019.02.0388.0
07411.03.02.01.0
088.0124.06.0279.0
09341.09.067.00.0
1014.019.010.0374.0
1153.0345.09.010.0
126.0319.00.092.0
13399.04.06.08.0
147.059.015.0336.0
15300.015.049.053.0
1633.0326.09.049.0
17349.044.017.07.0
18318.011.070.018.0
1920.029.024.0344.0
2039.05.0359.014.0
2133.07.0372.05.0
22385.09.016.07.0
PFM
ACGT
010.0380.0530.0360.873
020.1510.0310.8110.007
030.0120.0310.0020.954
040.0020.00.9930.005
050.010.0020.9860.002
060.0190.0460.0050.93
070.9860.0070.0050.002
080.0190.2970.0140.669
090.8180.0220.1610.0
100.0340.0460.0240.897
110.1270.8270.0220.024
120.0140.7650.00.221
130.9570.010.0140.019
140.0170.1410.0360.806
150.7190.0360.1180.127
160.0790.7820.0220.118
170.8370.1060.0410.017
180.7630.0260.1680.043
190.0480.070.0580.825
200.0940.0120.8610.034
210.0790.0170.8920.012
220.9230.0220.0380.017
PWM
ACGT
01-1.798-1.504-1.8571.24
02-0.494-1.9861.166-3.155
03-2.788-1.986-3.7421.329
04-3.742-4.251.368-3.406
05-2.955-3.7421.361-3.742
06-2.409-1.64-3.4061.304
071.361-3.155-3.406-3.742
08-2.4090.171-2.6450.975
091.175-2.309-0.434-4.25
10-1.92-1.64-2.2181.267
11-0.6631.187-2.309-2.218
12-2.6451.109-4.25-0.123
131.332-2.955-2.645-2.409
14-2.52-0.558-1.8571.16
151.048-1.857-0.739-0.663
16-1.121.13-2.309-0.739
171.198-0.843-1.743-2.52
181.106-2.135-0.391-1.69
19-1.593-1.243-1.4221.184
20-0.96-2.7881.226-1.92
21-1.12-2.521.262-2.788
221.296-2.309-1.798-2.52
Standard thresholds
P-value Threshold
0.001 -3.69519
0.0005 -2.07409
0.0001 1.40101