ZNF79.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF79.H12RSNP.0.P.D
Gene (human)	ZNF79 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	hhMAWvRARWdMMYvYCTAAb
GC content	30.52%
Information content (bits; total / per base)	15.961 / 0.76
Data sources	ChIP-Seq
Aligned words	403

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.879	0.888	0.844	0.853	0.911	0.923	6.087	6.191	86.921	123.921

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.122
HGNC	HGNC:13153
MGI
EntrezGene (human)	GeneID:7633 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF79_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q15937 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF79.H12RSNP.0.P.D.pcm
PWM	ZNF79.H12RSNP.0.P.D.pwm
PFM	ZNF79.H12RSNP.0.P.D.pfm
Alignment	ZNF79.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZNF79.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZNF79.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZNF79.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZNF79.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZNF79.H12RSNP.0.P.D_homer_format_0.001.txt ZNF79.H12RSNP.0.P.D_homer_format_0.0005.txt ZNF79.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	109.0	145.0	51.0	98.0
02	88.0	188.0	37.0	90.0
03	270.0	61.0	44.0	28.0
04	328.0	18.0	28.0	29.0
05	309.0	9.0	28.0	57.0
06	83.0	68.0	214.0	38.0
07	286.0	10.0	98.0	9.0
08	370.0	10.0	9.0	14.0
09	279.0	32.0	86.0	6.0
10	160.0	14.0	28.0	201.0
11	73.0	18.0	153.0	159.0
12	321.0	39.0	30.0	13.0
13	295.0	66.0	25.0	17.0
14	32.0	33.0	17.0	321.0
15	98.0	167.0	76.0	62.0
16	47.0	52.0	16.0	288.0
17	18.0	326.0	40.0	19.0
18	39.0	2.0	47.0	315.0
19	376.0	11.0	11.0	5.0
20	371.0	9.0	12.0	11.0
21	15.0	87.0	168.0	133.0

PFM

	A	C	G	T
01	0.27	0.36	0.127	0.243
02	0.218	0.467	0.092	0.223
03	0.67	0.151	0.109	0.069
04	0.814	0.045	0.069	0.072
05	0.767	0.022	0.069	0.141
06	0.206	0.169	0.531	0.094
07	0.71	0.025	0.243	0.022
08	0.918	0.025	0.022	0.035
09	0.692	0.079	0.213	0.015
10	0.397	0.035	0.069	0.499
11	0.181	0.045	0.38	0.395
12	0.797	0.097	0.074	0.032
13	0.732	0.164	0.062	0.042
14	0.079	0.082	0.042	0.797
15	0.243	0.414	0.189	0.154
16	0.117	0.129	0.04	0.715
17	0.045	0.809	0.099	0.047
18	0.097	0.005	0.117	0.782
19	0.933	0.027	0.027	0.012
20	0.921	0.022	0.03	0.027
21	0.037	0.216	0.417	0.33

PWM

	A	C	G	T
01	0.078	0.36	-0.667	-0.027
02	-0.133	0.617	-0.977	-0.111
03	0.977	-0.492	-0.81	-1.243
04	1.17	-1.657	-1.243	-1.21
05	1.111	-2.276	-1.243	-0.558
06	-0.191	-0.386	0.746	-0.951
07	1.034	-2.185	-0.027	-2.276
08	1.29	-2.185	-2.276	-1.887
09	1.009	-1.116	-0.156	-2.613
10	0.457	-1.887	-1.243	0.683
11	-0.317	-1.657	0.413	0.451
12	1.149	-0.926	-1.177	-1.953
13	1.065	-0.415	-1.35	-1.71
14	-1.116	-1.086	-1.71	1.149
15	-0.027	0.5	-0.277	-0.476
16	-0.746	-0.648	-1.765	1.041
17	-1.657	1.164	-0.902	-1.607
18	-0.926	-3.375	-0.746	1.13
19	1.306	-2.102	-2.102	-2.756
20	1.293	-2.276	-2.025	-2.102
21	-1.824	-0.144	0.505	0.274

Standard thresholds

P-value	Threshold
0.001	3.19431
0.0005	4.23836
0.0001	6.46131