ZNF77.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF77.H12RSNP.0.P.D
Gene (human)	ZNF77 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	vYYYhhYMCTYCACYhbnhhhRv
GC content	50.17%
Information content (bits; total / per base)	13.677 / 0.595
Data sources	ChIP-Seq
Aligned words	467

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.901	0.937	0.89	0.928	0.918	0.952	6.306	6.879	125.365	131.523

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF763-like {2.3.3.33} (TFClass)
TFClass ID	TFClass: 2.3.3.33.10
HGNC	HGNC:13150
MGI
EntrezGene (human)	GeneID:58492 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF77_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q15935 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF77.H12RSNP.0.P.D.pcm
PWM	ZNF77.H12RSNP.0.P.D.pwm
PFM	ZNF77.H12RSNP.0.P.D.pfm
Alignment	ZNF77.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZNF77.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZNF77.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZNF77.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZNF77.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZNF77.H12RSNP.0.P.D_homer_format_0.001.txt ZNF77.H12RSNP.0.P.D_homer_format_0.0005.txt ZNF77.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	126.0	80.0	235.0	26.0
02	49.0	254.0	21.0	143.0
03	16.0	60.0	36.0	355.0
04	22.0	144.0	46.0	255.0
05	121.0	259.0	42.0	45.0
06	59.0	235.0	38.0	135.0
07	70.0	294.0	28.0	75.0
08	328.0	77.0	40.0	22.0
09	31.0	381.0	26.0	29.0
10	16.0	49.0	4.0	398.0
11	34.0	155.0	22.0	256.0
12	2.0	446.0	5.0	14.0
13	397.0	46.0	6.0	18.0
14	18.0	399.0	16.0	34.0
15	23.0	301.0	6.0	137.0
16	115.0	213.0	39.0	100.0
17	64.0	121.0	95.0	187.0
18	120.0	154.0	129.0	64.0
19	72.0	123.0	57.0	215.0
20	131.0	169.0	55.0	112.0
21	220.0	173.0	34.0	40.0
22	319.0	42.0	68.0	38.0
23	259.0	46.0	120.0	42.0

PFM

	A	C	G	T
01	0.27	0.171	0.503	0.056
02	0.105	0.544	0.045	0.306
03	0.034	0.128	0.077	0.76
04	0.047	0.308	0.099	0.546
05	0.259	0.555	0.09	0.096
06	0.126	0.503	0.081	0.289
07	0.15	0.63	0.06	0.161
08	0.702	0.165	0.086	0.047
09	0.066	0.816	0.056	0.062
10	0.034	0.105	0.009	0.852
11	0.073	0.332	0.047	0.548
12	0.004	0.955	0.011	0.03
13	0.85	0.099	0.013	0.039
14	0.039	0.854	0.034	0.073
15	0.049	0.645	0.013	0.293
16	0.246	0.456	0.084	0.214
17	0.137	0.259	0.203	0.4
18	0.257	0.33	0.276	0.137
19	0.154	0.263	0.122	0.46
20	0.281	0.362	0.118	0.24
21	0.471	0.37	0.073	0.086
22	0.683	0.09	0.146	0.081
23	0.555	0.099	0.257	0.09

PWM

	A	C	G	T
01	0.075	-0.372	0.693	-1.458
02	-0.85	0.77	-1.658	0.2
03	-1.909	-0.653	-1.148	1.103
04	-1.615	0.207	-0.912	0.774
05	0.035	0.79	-1.0	-0.933
06	-0.67	0.693	-1.096	0.143
07	-0.503	0.916	-1.387	-0.435
08	1.025	-0.41	-1.047	-1.615
09	-1.291	1.174	-1.458	-1.354
10	-1.909	-0.85	-3.062	1.217
11	-1.203	0.28	-1.615	0.778
12	-3.51	1.331	-2.896	-2.03
13	1.215	-0.912	-2.753	-1.801
14	-1.801	1.22	-1.909	-1.203
15	-1.573	0.939	-2.753	0.158
16	-0.015	0.595	-1.071	-0.153
17	-0.591	0.035	-0.203	0.466
18	0.027	0.274	0.099	-0.591
19	-0.475	0.051	-0.703	0.605
20	0.114	0.366	-0.738	-0.041
21	0.627	0.389	-1.203	-1.047
22	0.997	-1.0	-0.531	-1.096
23	0.79	-0.912	0.027	-1.0

Standard thresholds

P-value	Threshold
0.001	3.88741
0.0005	4.83911
0.0001	6.85241