ZNF74.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF74.H12INVITRO.0.P.D
Gene (human)	ZNF74 (GeneCards)
Gene synonyms (human)	ZNF520
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	22
Consensus	AAAYAAYACTGYRRWGAACATC
GC content	37.33%
Information content (bits; total / per base)	30.031 / 1.365
Data sources	ChIP-Seq
Aligned words	94

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.93	0.93	0.942	0.942	0.96	0.96	14.331	14.331	53.959	53.959

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.132
HGNC	HGNC:13144
MGI
EntrezGene (human)	GeneID:7625 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF74_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q16587 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF74.H12INVITRO.0.P.D.pcm
PWM	ZNF74.H12INVITRO.0.P.D.pwm
PFM	ZNF74.H12INVITRO.0.P.D.pfm
Alignment	ZNF74.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZNF74.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZNF74.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZNF74.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZNF74.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZNF74.H12INVITRO.0.P.D_homer_format_0.001.txt ZNF74.H12INVITRO.0.P.D_homer_format_0.0005.txt ZNF74.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	93.0	1.0	0.0	0.0
02	89.0	1.0	4.0	0.0
03	88.0	0.0	4.0	2.0
04	2.0	55.0	1.0	36.0
05	89.0	2.0	0.0	3.0
06	83.0	6.0	5.0	0.0
07	1.0	45.0	2.0	46.0
08	49.0	0.0	45.0	0.0
09	6.0	86.0	0.0	2.0
10	6.0	9.0	1.0	78.0
11	9.0	1.0	83.0	1.0
12	7.0	55.0	3.0	29.0
13	64.0	2.0	25.0	3.0
14	62.0	3.0	21.0	8.0
15	10.0	6.0	8.0	70.0
16	1.0	0.0	93.0	0.0
17	74.0	0.0	20.0	0.0
18	94.0	0.0	0.0	0.0
19	1.0	92.0	0.0	1.0
20	92.0	0.0	0.0	2.0
21	1.0	0.0	1.0	92.0
22	0.0	89.0	3.0	2.0

PFM

	A	C	G	T
01	0.989	0.011	0.0	0.0
02	0.947	0.011	0.043	0.0
03	0.936	0.0	0.043	0.021
04	0.021	0.585	0.011	0.383
05	0.947	0.021	0.0	0.032
06	0.883	0.064	0.053	0.0
07	0.011	0.479	0.021	0.489
08	0.521	0.0	0.479	0.0
09	0.064	0.915	0.0	0.021
10	0.064	0.096	0.011	0.83
11	0.096	0.011	0.883	0.011
12	0.074	0.585	0.032	0.309
13	0.681	0.021	0.266	0.032
14	0.66	0.032	0.223	0.085
15	0.106	0.064	0.085	0.745
16	0.011	0.0	0.989	0.0
17	0.787	0.0	0.213	0.0
18	1.0	0.0	0.0	0.0
19	0.011	0.979	0.0	0.011
20	0.979	0.0	0.0	0.021
21	0.011	0.0	0.011	0.979
22	0.0	0.947	0.032	0.021

PWM

	A	C	G	T
01	1.341	-2.445	-3.077	-3.077
02	1.297	-2.445	-1.568	-3.077
03	1.286	-3.077	-1.568	-2.061
04	-2.061	0.824	-2.445	0.41
05	1.297	-2.061	-3.077	-1.785
06	1.228	-1.239	-1.39	-3.077
07	-2.445	0.627	-2.061	0.649
08	0.711	-3.077	0.627	-3.077
09	-1.239	1.263	-3.077	-2.061
10	-1.239	-0.888	-2.445	1.167
11	-0.888	-2.445	1.228	-2.445
12	-1.108	0.824	-1.785	0.202
13	0.972	-2.061	0.059	-1.785
14	0.941	-1.785	-0.107	-0.992
15	-0.794	-1.239	-0.992	1.06
16	-2.445	-3.077	1.341	-3.077
17	1.115	-3.077	-0.153	-3.077
18	1.351	-3.077	-3.077	-3.077
19	-2.445	1.33	-3.077	-2.445
20	1.33	-3.077	-3.077	-2.061
21	-2.445	-3.077	-2.445	1.33
22	-3.077	1.297	-1.785	-2.061

Standard thresholds

P-value	Threshold
0.001	-2.88274
0.0005	-1.31774
0.0001	2.03986