ZNF7.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF7.H12INVIVO.0.P.B
Gene (human)	ZNF7 (GeneCards)
Gene synonyms (human)	KOX4
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	23
Consensus	bhbYGYYdvCWCTTRnddbKdbY
GC content	47.32%
Information content (bits; total / per base)	13.95 / 0.607
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (11)	0.85	0.876	0.819	0.84	0.861	0.875	6.404	7.317	243.027	485.921

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.190
HGNC	HGNC:13139
MGI
EntrezGene (human)	GeneID:7553 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF7_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P17097 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF7.H12INVIVO.0.P.B.pcm
PWM	ZNF7.H12INVIVO.0.P.B.pwm
PFM	ZNF7.H12INVIVO.0.P.B.pfm
Alignment	ZNF7.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	ZNF7.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ZNF7.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	ZNF7.H12INVIVO.0.P.B_meme_format.meme
Transfac format	ZNF7.H12INVIVO.0.P.B_transfac_format.txt
Homer format	ZNF7.H12INVIVO.0.P.B_homer_format_0.001.txt ZNF7.H12INVIVO.0.P.B_homer_format_0.0005.txt ZNF7.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	100.0	514.0	135.0	251.0
02	106.0	525.0	65.0	304.0
03	96.0	256.0	169.0	479.0
04	49.0	107.0	54.0	790.0
05	73.0	54.0	809.0	64.0
06	64.0	541.0	10.0	385.0
07	99.0	687.0	85.0	129.0
08	526.0	80.0	154.0	240.0
09	362.0	220.0	381.0	37.0
10	15.0	973.0	2.0	10.0
11	613.0	47.0	5.0	335.0
12	0.0	683.0	3.0	314.0
13	113.0	43.0	24.0	820.0
14	28.0	68.0	42.0	862.0
15	306.0	41.0	542.0	111.0
16	178.0	158.0	343.0	321.0
17	234.0	107.0	244.0	415.0
18	409.0	122.0	192.0	277.0
19	85.0	275.0	105.0	535.0
20	106.0	80.0	117.0	697.0
21	164.0	103.0	539.0	194.0
22	53.0	215.0	182.0	550.0
23	51.0	728.0	55.0	166.0

PFM

	A	C	G	T
01	0.1	0.514	0.135	0.251
02	0.106	0.525	0.065	0.304
03	0.096	0.256	0.169	0.479
04	0.049	0.107	0.054	0.79
05	0.073	0.054	0.809	0.064
06	0.064	0.541	0.01	0.385
07	0.099	0.687	0.085	0.129
08	0.526	0.08	0.154	0.24
09	0.362	0.22	0.381	0.037
10	0.015	0.973	0.002	0.01
11	0.613	0.047	0.005	0.335
12	0.0	0.683	0.003	0.314
13	0.113	0.043	0.024	0.82
14	0.028	0.068	0.042	0.862
15	0.306	0.041	0.542	0.111
16	0.178	0.158	0.343	0.321
17	0.234	0.107	0.244	0.415
18	0.409	0.122	0.192	0.277
19	0.085	0.275	0.105	0.535
20	0.106	0.08	0.117	0.697
21	0.164	0.103	0.539	0.194
22	0.053	0.215	0.182	0.55
23	0.051	0.728	0.055	0.166

PWM

	A	C	G	T
01	-0.906	0.717	-0.61	0.004
02	-0.849	0.738	-1.328	0.194
03	-0.946	0.024	-0.388	0.647
04	-1.602	-0.84	-1.508	1.146
05	-1.215	-1.508	1.17	-1.343
06	-1.343	0.768	-3.066	0.429
07	-0.916	1.006	-1.066	-0.655
08	0.74	-1.125	-0.48	-0.041
09	0.368	-0.127	0.419	-1.872
10	-2.711	1.354	-4.213	-3.066
11	0.893	-1.642	-3.622	0.291
12	-4.982	1.001	-3.975	0.227
13	-0.786	-1.728	-2.281	1.183
14	-2.136	-1.284	-1.75	1.233
15	0.201	-1.774	0.77	-0.803
16	-0.337	-0.455	0.314	0.248
17	-0.066	-0.84	-0.024	0.504
18	0.49	-0.71	-0.262	0.102
19	-1.066	0.095	-0.858	0.757
20	-0.849	-1.125	-0.752	1.021
21	-0.418	-0.877	0.765	-0.252
22	-1.526	-0.15	-0.315	0.785
23	-1.563	1.064	-1.49	-0.406

Standard thresholds

P-value	Threshold
0.001	3.72481
0.0005	4.72311
0.0001	6.81541