ZNF44.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF44.H12INVIVO.0.P.C
Gene (human)	ZNF44 (GeneCards)
Gene synonyms (human)	GIOT2, KOX7, ZNF55, ZNF58
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	21
Consensus	vbRbYvYKGCdGYdRdGAWvv
GC content	54.93%
Information content (bits; total / per base)	13.765 / 0.655
Data sources	ChIP-Seq
Aligned words	997

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.927	0.942	0.892	0.915	0.918	0.931	5.593	6.048	361.994	390.658

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF442-like {2.3.3.74} (TFClass)
TFClass ID	TFClass: 2.3.3.74.3
HGNC	HGNC:13110
MGI
EntrezGene (human)	GeneID:51710 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF44_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P15621 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF44.H12INVIVO.0.P.C.pcm
PWM	ZNF44.H12INVIVO.0.P.C.pwm
PFM	ZNF44.H12INVIVO.0.P.C.pfm
Alignment	ZNF44.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZNF44.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZNF44.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZNF44.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZNF44.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZNF44.H12INVIVO.0.P.C_homer_format_0.001.txt ZNF44.H12INVIVO.0.P.C_homer_format_0.0005.txt ZNF44.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	267.0	331.0	320.0	79.0
02	132.0	276.0	206.0	383.0
03	134.0	61.0	748.0	54.0
04	106.0	308.0	350.0	233.0
05	49.0	221.0	110.0	617.0
06	435.0	220.0	323.0	19.0
07	90.0	227.0	68.0	612.0
08	26.0	33.0	257.0	681.0
09	8.0	15.0	963.0	11.0
10	33.0	933.0	13.0	18.0
11	335.0	126.0	141.0	395.0
12	6.0	8.0	976.0	7.0
13	41.0	397.0	55.0	504.0
14	307.0	103.0	330.0	257.0
15	219.0	149.0	574.0	55.0
16	430.0	86.0	348.0	133.0
17	56.0	1.0	924.0	16.0
18	892.0	37.0	65.0	3.0
19	619.0	87.0	139.0	152.0
20	479.0	170.0	192.0	156.0
21	263.0	170.0	439.0	125.0

PFM

	A	C	G	T
01	0.268	0.332	0.321	0.079
02	0.132	0.277	0.207	0.384
03	0.134	0.061	0.75	0.054
04	0.106	0.309	0.351	0.234
05	0.049	0.222	0.11	0.619
06	0.436	0.221	0.324	0.019
07	0.09	0.228	0.068	0.614
08	0.026	0.033	0.258	0.683
09	0.008	0.015	0.966	0.011
10	0.033	0.936	0.013	0.018
11	0.336	0.126	0.141	0.396
12	0.006	0.008	0.979	0.007
13	0.041	0.398	0.055	0.506
14	0.308	0.103	0.331	0.258
15	0.22	0.149	0.576	0.055
16	0.431	0.086	0.349	0.133
17	0.056	0.001	0.927	0.016
18	0.895	0.037	0.065	0.003
19	0.621	0.087	0.139	0.152
20	0.48	0.171	0.193	0.156
21	0.264	0.171	0.44	0.125

PWM

	A	C	G	T
01	0.068	0.282	0.248	-1.134
02	-0.63	0.101	-0.189	0.427
03	-0.615	-1.387	1.094	-1.505
04	-0.846	0.21	0.337	-0.067
05	-1.599	-0.119	-0.809	0.902
06	0.554	-0.124	0.258	-2.494
07	-1.007	-0.093	-1.281	0.894
08	-2.203	-1.978	0.03	1.001
09	-3.251	-2.708	1.346	-2.982
10	-1.978	1.315	-2.836	-2.543
11	0.294	-0.675	-0.564	0.458
12	-3.481	-3.251	1.36	-3.359
13	-1.771	0.463	-1.487	0.701
14	0.207	-0.874	0.279	0.03
15	-0.128	-0.51	0.83	-1.487
16	0.542	-1.051	0.332	-0.622
17	-1.47	-4.522	1.305	-2.65
18	1.27	-1.869	-1.325	-3.972
19	0.906	-1.04	-0.579	-0.49
20	0.65	-0.379	-0.259	-0.464
21	0.053	-0.379	0.563	-0.683

Standard thresholds

P-value	Threshold
0.001	3.62416
0.0005	4.67706
0.0001	6.87151