MotifZNF44.H12INVITRO.0.P.D
Gene (human)ZNF44
(GeneCards)
Gene synonyms (human)GIOT2, KOX7, ZNF55, ZNF58
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length21
ConsensusvbRbYvYKGCdGYdRdGAWvv
GC content54.93%
Information content (bits; total / per base)13.765 / 0.655
Data sourcesChIP-Seq
Aligned words997

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.927 0.942 0.892 0.915 0.918 0.931 5.593 6.048 361.994 390.658
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF442-like {2.3.3.74} (TFClass)
TFClass IDTFClass: 2.3.3.74.3
HGNCHGNC:13110
MGI
EntrezGene (human)GeneID:51710
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZNF44_HUMAN
UniProt ID (mouse)
UniProt AC (human)P15621
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01267.0331.0320.079.0
02132.0276.0206.0383.0
03134.061.0748.054.0
04106.0308.0350.0233.0
0549.0221.0110.0617.0
06435.0220.0323.019.0
0790.0227.068.0612.0
0826.033.0257.0681.0
098.015.0963.011.0
1033.0933.013.018.0
11335.0126.0141.0395.0
126.08.0976.07.0
1341.0397.055.0504.0
14307.0103.0330.0257.0
15219.0149.0574.055.0
16430.086.0348.0133.0
1756.01.0924.016.0
18892.037.065.03.0
19619.087.0139.0152.0
20479.0170.0192.0156.0
21263.0170.0439.0125.0
PFM
ACGT
010.2680.3320.3210.079
020.1320.2770.2070.384
030.1340.0610.750.054
040.1060.3090.3510.234
050.0490.2220.110.619
060.4360.2210.3240.019
070.090.2280.0680.614
080.0260.0330.2580.683
090.0080.0150.9660.011
100.0330.9360.0130.018
110.3360.1260.1410.396
120.0060.0080.9790.007
130.0410.3980.0550.506
140.3080.1030.3310.258
150.220.1490.5760.055
160.4310.0860.3490.133
170.0560.0010.9270.016
180.8950.0370.0650.003
190.6210.0870.1390.152
200.480.1710.1930.156
210.2640.1710.440.125
PWM
ACGT
010.0680.2820.248-1.134
02-0.630.101-0.1890.427
03-0.615-1.3871.094-1.505
04-0.8460.210.337-0.067
05-1.599-0.119-0.8090.902
060.554-0.1240.258-2.494
07-1.007-0.093-1.2810.894
08-2.203-1.9780.031.001
09-3.251-2.7081.346-2.982
10-1.9781.315-2.836-2.543
110.294-0.675-0.5640.458
12-3.481-3.2511.36-3.359
13-1.7710.463-1.4870.701
140.207-0.8740.2790.03
15-0.128-0.510.83-1.487
160.542-1.0510.332-0.622
17-1.47-4.5221.305-2.65
181.27-1.869-1.325-3.972
190.906-1.04-0.579-0.49
200.65-0.379-0.259-0.464
210.053-0.3790.563-0.683
Standard thresholds
P-value Threshold
0.001 3.62416
0.0005 4.67706
0.0001 6.87151