ZNF41.H12INVIVO.1.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF41.H12INVIVO.1.P.C
Gene (human)	ZNF41 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	C

Motif length	15
Consensus	nMAhRRGGRAdhvhv
GC content	48.65%
Information content (bits; total / per base)	10.754 / 0.717
Data sources	ChIP-Seq
Aligned words	1029

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.83	0.838	0.744	0.753	0.831	0.84	2.997	3.072	301.076	342.432

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF81-like {2.3.3.68} (TFClass)
TFClass ID	TFClass: 2.3.3.68.3
HGNC	HGNC:13107
MGI
EntrezGene (human)	GeneID:7592 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF41_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P51814 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF41.H12INVIVO.1.P.C.pcm
PWM	ZNF41.H12INVIVO.1.P.C.pwm
PFM	ZNF41.H12INVIVO.1.P.C.pfm
Alignment	ZNF41.H12INVIVO.1.P.C.words.tsv
Threshold to P-value map	ZNF41.H12INVIVO.1.P.C.thr
Motif in other formats
JASPAR format	ZNF41.H12INVIVO.1.P.C_jaspar_format.txt
MEME format	ZNF41.H12INVIVO.1.P.C_meme_format.meme
Transfac format	ZNF41.H12INVIVO.1.P.C_transfac_format.txt
Homer format	ZNF41.H12INVIVO.1.P.C_homer_format_0.001.txt ZNF41.H12INVIVO.1.P.C_homer_format_0.0005.txt ZNF41.H12INVIVO.1.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	260.0	389.0	178.0	202.0
02	207.0	713.0	78.0	31.0
03	897.0	15.0	112.0	5.0
04	150.0	549.0	58.0	272.0
05	678.0	20.0	307.0	24.0
06	713.0	9.0	183.0	124.0
07	17.0	2.0	1001.0	9.0
08	33.0	57.0	846.0	93.0
09	453.0	5.0	568.0	3.0
10	1005.0	3.0	13.0	8.0
11	308.0	69.0	539.0	113.0
12	385.0	168.0	98.0	378.0
13	369.0	129.0	406.0	125.0
14	441.0	258.0	161.0	169.0
15	360.0	285.0	290.0	94.0

PFM

	A	C	G	T
01	0.253	0.378	0.173	0.196
02	0.201	0.693	0.076	0.03
03	0.872	0.015	0.109	0.005
04	0.146	0.534	0.056	0.264
05	0.659	0.019	0.298	0.023
06	0.693	0.009	0.178	0.121
07	0.017	0.002	0.973	0.009
08	0.032	0.055	0.822	0.09
09	0.44	0.005	0.552	0.003
10	0.977	0.003	0.013	0.008
11	0.299	0.067	0.524	0.11
12	0.374	0.163	0.095	0.367
13	0.359	0.125	0.395	0.121
14	0.429	0.251	0.156	0.164
15	0.35	0.277	0.282	0.091

PWM

	A	C	G	T
01	0.011	0.411	-0.365	-0.24
02	-0.216	1.015	-1.178	-2.068
03	1.244	-2.739	-0.823	-3.65
04	-0.535	0.754	-1.467	0.055
05	0.965	-2.478	0.176	-2.309
06	1.015	-3.183	-0.338	-0.723
07	-2.626	-4.239	1.354	-3.183
08	-2.009	-1.484	1.186	-1.006
09	0.563	-3.65	0.788	-4.002
10	1.358	-4.002	-2.867	-3.281
11	0.179	-1.298	0.736	-0.814
12	0.401	-0.423	-0.954	0.383
13	0.359	-0.684	0.454	-0.715
14	0.536	0.003	-0.465	-0.417
15	0.334	0.102	0.119	-0.995

Standard thresholds

P-value	Threshold
0.001	4.57631
0.0005	5.49236
0.0001	7.32591