ZNF41.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF41.H12INVIVO.0.P.C
Gene (human)	ZNF41 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	25
Consensus	MRRGRRARhvvRvSACMAKSWKnvR
GC content	48.69%
Information content (bits; total / per base)	18.173 / 0.727
Data sources	ChIP-Seq
Aligned words	728

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.854	0.862	0.827	0.841	0.892	0.895	6.099	6.259	405.244	437.046

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF81-like {2.3.3.68} (TFClass)
TFClass ID	TFClass: 2.3.3.68.3
HGNC	HGNC:13107
MGI
EntrezGene (human)	GeneID:7592 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF41_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P51814 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF41.H12INVIVO.0.P.C.pcm
PWM	ZNF41.H12INVIVO.0.P.C.pwm
PFM	ZNF41.H12INVIVO.0.P.C.pfm
Alignment	ZNF41.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZNF41.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZNF41.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZNF41.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZNF41.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZNF41.H12INVIVO.0.P.C_homer_format_0.001.txt ZNF41.H12INVIVO.0.P.C_homer_format_0.0005.txt ZNF41.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	108.0	460.0	74.0	86.0
02	528.0	48.0	113.0	39.0
03	498.0	15.0	187.0	28.0
04	74.0	15.0	594.0	45.0
05	96.0	28.0	561.0	43.0
06	291.0	8.0	422.0	7.0
07	688.0	3.0	27.0	10.0
08	352.0	38.0	327.0	11.0
09	199.0	136.0	71.0	322.0
10	312.0	159.0	148.0	109.0
11	379.0	100.0	180.0	69.0
12	280.0	20.0	369.0	59.0
13	199.0	172.0	269.0	88.0
14	51.0	508.0	91.0	78.0
15	703.0	5.0	16.0	4.0
16	15.0	658.0	46.0	9.0
17	184.0	502.0	6.0	36.0
18	630.0	10.0	79.0	9.0
19	68.0	30.0	82.0	548.0
20	81.0	130.0	476.0	41.0
21	545.0	31.0	74.0	78.0
22	73.0	69.0	492.0	94.0
23	104.0	158.0	266.0	200.0
24	226.0	93.0	324.0	85.0
25	514.0	79.0	92.0	43.0

PFM

	A	C	G	T
01	0.148	0.632	0.102	0.118
02	0.725	0.066	0.155	0.054
03	0.684	0.021	0.257	0.038
04	0.102	0.021	0.816	0.062
05	0.132	0.038	0.771	0.059
06	0.4	0.011	0.58	0.01
07	0.945	0.004	0.037	0.014
08	0.484	0.052	0.449	0.015
09	0.273	0.187	0.098	0.442
10	0.429	0.218	0.203	0.15
11	0.521	0.137	0.247	0.095
12	0.385	0.027	0.507	0.081
13	0.273	0.236	0.37	0.121
14	0.07	0.698	0.125	0.107
15	0.966	0.007	0.022	0.005
16	0.021	0.904	0.063	0.012
17	0.253	0.69	0.008	0.049
18	0.865	0.014	0.109	0.012
19	0.093	0.041	0.113	0.753
20	0.111	0.179	0.654	0.056
21	0.749	0.043	0.102	0.107
22	0.1	0.095	0.676	0.129
23	0.143	0.217	0.365	0.275
24	0.31	0.128	0.445	0.117
25	0.706	0.109	0.126	0.059

PWM

	A	C	G	T
01	-0.516	0.922	-0.887	-0.74
02	1.059	-1.308	-0.471	-1.508
03	1.001	-2.401	0.027	-1.824
04	-0.887	-2.401	1.177	-1.37
05	-0.632	-1.824	1.12	-1.414
06	0.466	-2.946	0.836	-3.056
07	1.323	-3.677	-1.858	-2.758
08	0.655	-1.533	0.582	-2.676
09	0.089	-0.288	-0.927	0.567
10	0.535	-0.134	-0.205	-0.507
11	0.729	-0.592	-0.011	-0.955
12	0.428	-2.138	0.702	-1.108
13	0.089	-0.056	0.388	-0.717
14	-1.249	1.021	-0.684	-0.835
15	1.345	-3.319	-2.342	-3.482
16	-2.401	1.279	-1.349	-2.848
17	0.011	1.009	-3.179	-1.585
18	1.235	-2.758	-0.823	-2.848
19	-0.97	-1.758	-0.786	1.096
20	-0.798	-0.333	0.956	-1.46
21	1.091	-1.727	-0.887	-0.835
22	-0.9	-0.955	0.989	-0.652
23	-0.553	-0.14	0.377	0.094
24	0.215	-0.663	0.573	-0.751
25	1.032	-0.823	-0.673	-1.414

Standard thresholds

P-value	Threshold
0.001	2.21781
0.0005	3.38966
0.0001	5.87671