MotifZNF41.H12INVIVO.0.P.C
Gene (human)ZNF41
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length25
ConsensusMRRGRRARhvvRvSACMAKSWKnvR
GC content48.69%
Information content (bits; total / per base)18.173 / 0.727
Data sourcesChIP-Seq
Aligned words728

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (5) 0.854 0.862 0.827 0.841 0.892 0.895 6.099 6.259 405.244 437.046
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF81-like {2.3.3.68} (TFClass)
TFClass IDTFClass: 2.3.3.68.3
HGNCHGNC:13107
MGI
EntrezGene (human)GeneID:7592
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZNF41_HUMAN
UniProt ID (mouse)
UniProt AC (human)P51814
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01108.0460.074.086.0
02528.048.0113.039.0
03498.015.0187.028.0
0474.015.0594.045.0
0596.028.0561.043.0
06291.08.0422.07.0
07688.03.027.010.0
08352.038.0327.011.0
09199.0136.071.0322.0
10312.0159.0148.0109.0
11379.0100.0180.069.0
12280.020.0369.059.0
13199.0172.0269.088.0
1451.0508.091.078.0
15703.05.016.04.0
1615.0658.046.09.0
17184.0502.06.036.0
18630.010.079.09.0
1968.030.082.0548.0
2081.0130.0476.041.0
21545.031.074.078.0
2273.069.0492.094.0
23104.0158.0266.0200.0
24226.093.0324.085.0
25514.079.092.043.0
PFM
ACGT
010.1480.6320.1020.118
020.7250.0660.1550.054
030.6840.0210.2570.038
040.1020.0210.8160.062
050.1320.0380.7710.059
060.40.0110.580.01
070.9450.0040.0370.014
080.4840.0520.4490.015
090.2730.1870.0980.442
100.4290.2180.2030.15
110.5210.1370.2470.095
120.3850.0270.5070.081
130.2730.2360.370.121
140.070.6980.1250.107
150.9660.0070.0220.005
160.0210.9040.0630.012
170.2530.690.0080.049
180.8650.0140.1090.012
190.0930.0410.1130.753
200.1110.1790.6540.056
210.7490.0430.1020.107
220.10.0950.6760.129
230.1430.2170.3650.275
240.310.1280.4450.117
250.7060.1090.1260.059
PWM
ACGT
01-0.5160.922-0.887-0.74
021.059-1.308-0.471-1.508
031.001-2.4010.027-1.824
04-0.887-2.4011.177-1.37
05-0.632-1.8241.12-1.414
060.466-2.9460.836-3.056
071.323-3.677-1.858-2.758
080.655-1.5330.582-2.676
090.089-0.288-0.9270.567
100.535-0.134-0.205-0.507
110.729-0.592-0.011-0.955
120.428-2.1380.702-1.108
130.089-0.0560.388-0.717
14-1.2491.021-0.684-0.835
151.345-3.319-2.342-3.482
16-2.4011.279-1.349-2.848
170.0111.009-3.179-1.585
181.235-2.758-0.823-2.848
19-0.97-1.758-0.7861.096
20-0.798-0.3330.956-1.46
211.091-1.727-0.887-0.835
22-0.9-0.9550.989-0.652
23-0.553-0.140.3770.094
240.215-0.6630.573-0.751
251.032-0.823-0.673-1.414
Standard thresholds
P-value Threshold
0.001 2.21781
0.0005 3.38966
0.0001 5.87671