MotifZNF41.H12INVITRO.1.P.D
Gene (human)ZNF41
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length15
ConsensusnMAhRRGGRAdhvhv
GC content48.65%
Information content (bits; total / per base)10.754 / 0.717
Data sourcesChIP-Seq
Aligned words1029

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (5) 0.83 0.838 0.744 0.753 0.831 0.84 2.997 3.072 301.076 342.432
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF81-like {2.3.3.68} (TFClass)
TFClass IDTFClass: 2.3.3.68.3
HGNCHGNC:13107
MGI
EntrezGene (human)GeneID:7592
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZNF41_HUMAN
UniProt ID (mouse)
UniProt AC (human)P51814
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01260.0389.0178.0202.0
02207.0713.078.031.0
03897.015.0112.05.0
04150.0549.058.0272.0
05678.020.0307.024.0
06713.09.0183.0124.0
0717.02.01001.09.0
0833.057.0846.093.0
09453.05.0568.03.0
101005.03.013.08.0
11308.069.0539.0113.0
12385.0168.098.0378.0
13369.0129.0406.0125.0
14441.0258.0161.0169.0
15360.0285.0290.094.0
PFM
ACGT
010.2530.3780.1730.196
020.2010.6930.0760.03
030.8720.0150.1090.005
040.1460.5340.0560.264
050.6590.0190.2980.023
060.6930.0090.1780.121
070.0170.0020.9730.009
080.0320.0550.8220.09
090.440.0050.5520.003
100.9770.0030.0130.008
110.2990.0670.5240.11
120.3740.1630.0950.367
130.3590.1250.3950.121
140.4290.2510.1560.164
150.350.2770.2820.091
PWM
ACGT
010.0110.411-0.365-0.24
02-0.2161.015-1.178-2.068
031.244-2.739-0.823-3.65
04-0.5350.754-1.4670.055
050.965-2.4780.176-2.309
061.015-3.183-0.338-0.723
07-2.626-4.2391.354-3.183
08-2.009-1.4841.186-1.006
090.563-3.650.788-4.002
101.358-4.002-2.867-3.281
110.179-1.2980.736-0.814
120.401-0.423-0.9540.383
130.359-0.6840.454-0.715
140.5360.003-0.465-0.417
150.3340.1020.119-0.995
Standard thresholds
P-value Threshold
0.001 4.57631
0.0005 5.49236
0.0001 7.32591