MotifZNF35.H12INVIVO.1.P.C
Gene (human)ZNF35
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length10
ConsensusWRhAAASARY
GC content31.78%
Information content (bits; total / per base)10.516 / 1.052
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (5) 0.695 0.744 0.609 0.671 0.713 0.764 2.295 2.628 133.149 188.056
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.100
HGNCHGNC:13099
MGI
EntrezGene (human)GeneID:7584
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZNF35_HUMAN
UniProt ID (mouse)
UniProt AC (human)P13682
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01519.023.043.0415.0
02603.012.0356.029.0
03139.0314.0102.0445.0
04941.036.013.010.0
05983.06.010.01.0
06970.02.018.010.0
07186.0282.0519.013.0
08977.02.04.017.0
09283.012.0682.023.0
10104.0608.0134.0154.0
PFM
ACGT
010.5190.0230.0430.415
020.6030.0120.3560.029
030.1390.3140.1020.445
040.9410.0360.0130.01
050.9830.0060.010.001
060.970.0020.0180.01
070.1860.2820.5190.013
080.9770.0020.0040.017
090.2830.0120.6820.023
100.1040.6080.1340.154
PWM
ACGT
010.727-2.32-1.7280.504
020.876-2.9090.351-2.103
03-0.5820.227-0.8870.574
041.32-1.898-2.839-3.066
051.364-3.484-3.066-4.525
061.351-4.213-2.546-3.066
07-0.2930.120.727-2.839
081.358-4.213-3.783-2.598
090.123-2.9090.999-2.32
10-0.8670.885-0.618-0.48
Standard thresholds
P-value Threshold
0.001 4.509625
0.0005 5.481865
0.0001 7.596795