ZNF35.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF35.H12INVIVO.0.P.C
Gene (human)	ZNF35 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	AAARARYhnhhdnRAvhMAvhRA
GC content	33.62%
Information content (bits; total / per base)	14.896 / 0.648
Data sources	ChIP-Seq
Aligned words	998

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.697	0.744	0.633	0.695	0.744	0.786	4.819	5.656	178.244	235.377

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.100
HGNC	HGNC:13099
MGI
EntrezGene (human)	GeneID:7584 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF35_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P13682 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF35.H12INVIVO.0.P.C.pcm
PWM	ZNF35.H12INVIVO.0.P.C.pwm
PFM	ZNF35.H12INVIVO.0.P.C.pfm
Alignment	ZNF35.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZNF35.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZNF35.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZNF35.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZNF35.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZNF35.H12INVIVO.0.P.C_homer_format_0.001.txt ZNF35.H12INVIVO.0.P.C_homer_format_0.0005.txt ZNF35.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	797.0	106.0	69.0	26.0
02	867.0	41.0	60.0	30.0
03	874.0	9.0	92.0	23.0
04	228.0	147.0	608.0	15.0
05	795.0	18.0	88.0	97.0
06	182.0	51.0	731.0	34.0
07	112.0	594.0	64.0	228.0
08	356.0	160.0	80.0	402.0
09	216.0	398.0	200.0	184.0
10	231.0	309.0	91.0	367.0
11	198.0	200.0	191.0	409.0
12	563.0	82.0	223.0	130.0
13	207.0	382.0	253.0	156.0
14	673.0	112.0	157.0	56.0
15	806.0	30.0	110.0	52.0
16	595.0	140.0	170.0	93.0
17	245.0	168.0	92.0	493.0
18	404.0	484.0	79.0	31.0
19	942.0	26.0	19.0	11.0
20	789.0	77.0	77.0	55.0
21	201.0	284.0	136.0	377.0
22	780.0	74.0	115.0	29.0
23	833.0	47.0	72.0	46.0

PFM

	A	C	G	T
01	0.799	0.106	0.069	0.026
02	0.869	0.041	0.06	0.03
03	0.876	0.009	0.092	0.023
04	0.228	0.147	0.609	0.015
05	0.797	0.018	0.088	0.097
06	0.182	0.051	0.732	0.034
07	0.112	0.595	0.064	0.228
08	0.357	0.16	0.08	0.403
09	0.216	0.399	0.2	0.184
10	0.231	0.31	0.091	0.368
11	0.198	0.2	0.191	0.41
12	0.564	0.082	0.223	0.13
13	0.207	0.383	0.254	0.156
14	0.674	0.112	0.157	0.056
15	0.808	0.03	0.11	0.052
16	0.596	0.14	0.17	0.093
17	0.245	0.168	0.092	0.494
18	0.405	0.485	0.079	0.031
19	0.944	0.026	0.019	0.011
20	0.791	0.077	0.077	0.055
21	0.201	0.285	0.136	0.378
22	0.782	0.074	0.115	0.029
23	0.835	0.047	0.072	0.046

PWM

	A	C	G	T
01	1.157	-0.847	-1.268	-2.204
02	1.241	-1.772	-1.404	-2.069
03	1.249	-3.154	-0.986	-2.318
04	-0.089	-0.524	0.887	-2.709
05	1.154	-2.544	-1.03	-0.934
06	-0.313	-1.561	1.07	-1.95
07	-0.793	0.863	-1.341	-0.089
08	0.353	-0.44	-1.123	0.474
09	-0.143	0.464	-0.219	-0.302
10	-0.076	0.213	-0.997	0.384
11	-0.229	-0.219	-0.265	0.492
12	0.81	-1.099	-0.111	-0.646
13	-0.185	0.424	0.014	-0.465
14	0.988	-0.793	-0.459	-1.471
15	1.168	-2.069	-0.81	-1.542
16	0.865	-0.572	-0.38	-0.975
17	-0.018	-0.392	-0.986	0.678
18	0.479	0.659	-1.135	-2.038
19	1.323	-2.204	-2.495	-2.983
20	1.147	-1.16	-1.16	-1.488
21	-0.214	0.129	-0.601	0.41
22	1.135	-1.199	-0.767	-2.101
23	1.201	-1.64	-1.226	-1.661

Standard thresholds

P-value	Threshold
0.001	3.47141
0.0005	4.47736
0.0001	6.61716