MotifZNF35.H12INVIVO.0.P.C
Gene (human)ZNF35
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length23
ConsensusAAARARYhnhhdnRAvhMAvhRA
GC content33.62%
Information content (bits; total / per base)14.896 / 0.648
Data sourcesChIP-Seq
Aligned words998

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (5) 0.697 0.744 0.633 0.695 0.744 0.786 4.819 5.656 178.244 235.377
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.100
HGNCHGNC:13099
MGI
EntrezGene (human)GeneID:7584
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZNF35_HUMAN
UniProt ID (mouse)
UniProt AC (human)P13682
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01797.0106.069.026.0
02867.041.060.030.0
03874.09.092.023.0
04228.0147.0608.015.0
05795.018.088.097.0
06182.051.0731.034.0
07112.0594.064.0228.0
08356.0160.080.0402.0
09216.0398.0200.0184.0
10231.0309.091.0367.0
11198.0200.0191.0409.0
12563.082.0223.0130.0
13207.0382.0253.0156.0
14673.0112.0157.056.0
15806.030.0110.052.0
16595.0140.0170.093.0
17245.0168.092.0493.0
18404.0484.079.031.0
19942.026.019.011.0
20789.077.077.055.0
21201.0284.0136.0377.0
22780.074.0115.029.0
23833.047.072.046.0
PFM
ACGT
010.7990.1060.0690.026
020.8690.0410.060.03
030.8760.0090.0920.023
040.2280.1470.6090.015
050.7970.0180.0880.097
060.1820.0510.7320.034
070.1120.5950.0640.228
080.3570.160.080.403
090.2160.3990.20.184
100.2310.310.0910.368
110.1980.20.1910.41
120.5640.0820.2230.13
130.2070.3830.2540.156
140.6740.1120.1570.056
150.8080.030.110.052
160.5960.140.170.093
170.2450.1680.0920.494
180.4050.4850.0790.031
190.9440.0260.0190.011
200.7910.0770.0770.055
210.2010.2850.1360.378
220.7820.0740.1150.029
230.8350.0470.0720.046
PWM
ACGT
011.157-0.847-1.268-2.204
021.241-1.772-1.404-2.069
031.249-3.154-0.986-2.318
04-0.089-0.5240.887-2.709
051.154-2.544-1.03-0.934
06-0.313-1.5611.07-1.95
07-0.7930.863-1.341-0.089
080.353-0.44-1.1230.474
09-0.1430.464-0.219-0.302
10-0.0760.213-0.9970.384
11-0.229-0.219-0.2650.492
120.81-1.099-0.111-0.646
13-0.1850.4240.014-0.465
140.988-0.793-0.459-1.471
151.168-2.069-0.81-1.542
160.865-0.572-0.38-0.975
17-0.018-0.392-0.9860.678
180.4790.659-1.135-2.038
191.323-2.204-2.495-2.983
201.147-1.16-1.16-1.488
21-0.2140.129-0.6010.41
221.135-1.199-0.767-2.101
231.201-1.64-1.226-1.661
Standard thresholds
P-value Threshold
0.001 3.47141
0.0005 4.47736
0.0001 6.61716