ZNF35.H12INVITRO.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF35.H12INVITRO.1.P.D
Gene (human)	ZNF35 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	10
Consensus	WRhAAASARY
GC content	31.78%
Information content (bits; total / per base)	10.516 / 1.052
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.695	0.744	0.609	0.671	0.713	0.764	2.295	2.628	133.149	188.056

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.100
HGNC	HGNC:13099
MGI
EntrezGene (human)	GeneID:7584 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF35_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P13682 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF35.H12INVITRO.1.P.D.pcm
PWM	ZNF35.H12INVITRO.1.P.D.pwm
PFM	ZNF35.H12INVITRO.1.P.D.pfm
Alignment	ZNF35.H12INVITRO.1.P.D.words.tsv
Threshold to P-value map	ZNF35.H12INVITRO.1.P.D.thr
Motif in other formats
JASPAR format	ZNF35.H12INVITRO.1.P.D_jaspar_format.txt
MEME format	ZNF35.H12INVITRO.1.P.D_meme_format.meme
Transfac format	ZNF35.H12INVITRO.1.P.D_transfac_format.txt
Homer format	ZNF35.H12INVITRO.1.P.D_homer_format_0.001.txt ZNF35.H12INVITRO.1.P.D_homer_format_0.0005.txt ZNF35.H12INVITRO.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	519.0	23.0	43.0	415.0
02	603.0	12.0	356.0	29.0
03	139.0	314.0	102.0	445.0
04	941.0	36.0	13.0	10.0
05	983.0	6.0	10.0	1.0
06	970.0	2.0	18.0	10.0
07	186.0	282.0	519.0	13.0
08	977.0	2.0	4.0	17.0
09	283.0	12.0	682.0	23.0
10	104.0	608.0	134.0	154.0

PFM

	A	C	G	T
01	0.519	0.023	0.043	0.415
02	0.603	0.012	0.356	0.029
03	0.139	0.314	0.102	0.445
04	0.941	0.036	0.013	0.01
05	0.983	0.006	0.01	0.001
06	0.97	0.002	0.018	0.01
07	0.186	0.282	0.519	0.013
08	0.977	0.002	0.004	0.017
09	0.283	0.012	0.682	0.023
10	0.104	0.608	0.134	0.154

PWM

	A	C	G	T
01	0.727	-2.32	-1.728	0.504
02	0.876	-2.909	0.351	-2.103
03	-0.582	0.227	-0.887	0.574
04	1.32	-1.898	-2.839	-3.066
05	1.364	-3.484	-3.066	-4.525
06	1.351	-4.213	-2.546	-3.066
07	-0.293	0.12	0.727	-2.839
08	1.358	-4.213	-3.783	-2.598
09	0.123	-2.909	0.999	-2.32
10	-0.867	0.885	-0.618	-0.48

Standard thresholds

P-value	Threshold
0.001	4.509625
0.0005	5.481865
0.0001	7.596795