ZNF34.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF34.H12INVIVO.0.P.C
Gene (human)	ZNF34 (GeneCards)
Gene synonyms (human)	KOX32
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	20
Consensus	dKvhhhCAGvCTTbKCYKnd
GC content	47.73%
Information content (bits; total / per base)	13.555 / 0.678
Data sources	ChIP-Seq
Aligned words	64

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.608	0.621	0.539	0.563	0.576	0.578	1.905	2.243	36.824	41.319

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.130
HGNC	HGNC:13098
MGI
EntrezGene (human)	GeneID:80778 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF34_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8IZ26 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF34.H12INVIVO.0.P.C.pcm
PWM	ZNF34.H12INVIVO.0.P.C.pwm
PFM	ZNF34.H12INVIVO.0.P.C.pfm
Alignment	ZNF34.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZNF34.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZNF34.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZNF34.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZNF34.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZNF34.H12INVIVO.0.P.C_homer_format_0.001.txt ZNF34.H12INVIVO.0.P.C_homer_format_0.0005.txt ZNF34.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	23.0	5.0	8.0	28.0
02	10.0	3.0	35.0	16.0
03	20.0	26.0	12.0	6.0
04	24.0	22.0	6.0	12.0
05	20.0	22.0	7.0	15.0
06	8.0	21.0	7.0	28.0
07	2.0	52.0	2.0	8.0
08	53.0	1.0	4.0	6.0
09	2.0	1.0	61.0	0.0
10	34.0	7.0	17.0	6.0
11	2.0	54.0	0.0	8.0
12	1.0	1.0	4.0	58.0
13	3.0	1.0	0.0	60.0
14	3.0	16.0	25.0	20.0
15	4.0	4.0	10.0	46.0
16	4.0	56.0	3.0	1.0
17	10.0	29.0	1.0	24.0
18	4.0	6.0	14.0	40.0
19	3.0	33.0	14.0	14.0
20	17.0	8.0	13.0	26.0

PFM

	A	C	G	T
01	0.359	0.078	0.125	0.438
02	0.156	0.047	0.547	0.25
03	0.313	0.406	0.188	0.094
04	0.375	0.344	0.094	0.188
05	0.313	0.344	0.109	0.234
06	0.125	0.328	0.109	0.438
07	0.031	0.813	0.031	0.125
08	0.828	0.016	0.063	0.094
09	0.031	0.016	0.953	0.0
10	0.531	0.109	0.266	0.094
11	0.031	0.844	0.0	0.125
12	0.016	0.016	0.063	0.906
13	0.047	0.016	0.0	0.938
14	0.047	0.25	0.391	0.313
15	0.063	0.063	0.156	0.719
16	0.063	0.875	0.047	0.016
17	0.156	0.453	0.016	0.375
18	0.063	0.094	0.219	0.625
19	0.047	0.516	0.219	0.219
20	0.266	0.125	0.203	0.406

PWM

	A	C	G	T
01	0.344	-1.037	-0.634	0.533
02	-0.434	-1.439	0.749	0.0
03	0.211	0.462	-0.268	-0.884
04	0.385	0.302	-0.884	-0.268
05	0.211	0.302	-0.751	-0.06
06	-0.634	0.257	-0.751	0.533
07	-1.724	1.135	-1.724	-0.634
08	1.154	-2.123	-1.218	-0.884
09	-1.724	-2.123	1.292	-2.797
10	0.721	-0.751	0.057	-0.884
11	-1.724	1.173	-2.797	-0.634
12	-2.123	-2.123	-1.218	1.243
13	-1.439	-2.123	-2.797	1.276
14	-1.439	0.0	0.424	0.211
15	-1.218	-1.218	-0.434	1.015
16	-1.218	1.208	-1.439	-2.123
17	-0.434	0.567	-2.123	0.385
18	-1.218	-0.884	-0.125	0.879
19	-1.439	0.692	-0.125	-0.125
20	0.057	-0.634	-0.194	0.462

Standard thresholds

P-value	Threshold
0.001	4.28016
0.0005	5.16836
0.0001	7.04121