MotifZNF34.H12INVIVO.0.P.C
Gene (human)ZNF34
(GeneCards)
Gene synonyms (human)KOX32
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length20
ConsensusdKvhhhCAGvCTTbKCYKnd
GC content47.73%
Information content (bits; total / per base)13.555 / 0.678
Data sourcesChIP-Seq
Aligned words64

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (5) 0.608 0.621 0.539 0.563 0.576 0.578 1.905 2.243 36.824 41.319
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.130
HGNCHGNC:13098
MGI
EntrezGene (human)GeneID:80778
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZNF34_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q8IZ26
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0123.05.08.028.0
0210.03.035.016.0
0320.026.012.06.0
0424.022.06.012.0
0520.022.07.015.0
068.021.07.028.0
072.052.02.08.0
0853.01.04.06.0
092.01.061.00.0
1034.07.017.06.0
112.054.00.08.0
121.01.04.058.0
133.01.00.060.0
143.016.025.020.0
154.04.010.046.0
164.056.03.01.0
1710.029.01.024.0
184.06.014.040.0
193.033.014.014.0
2017.08.013.026.0
PFM
ACGT
010.3590.0780.1250.438
020.1560.0470.5470.25
030.3130.4060.1880.094
040.3750.3440.0940.188
050.3130.3440.1090.234
060.1250.3280.1090.438
070.0310.8130.0310.125
080.8280.0160.0630.094
090.0310.0160.9530.0
100.5310.1090.2660.094
110.0310.8440.00.125
120.0160.0160.0630.906
130.0470.0160.00.938
140.0470.250.3910.313
150.0630.0630.1560.719
160.0630.8750.0470.016
170.1560.4530.0160.375
180.0630.0940.2190.625
190.0470.5160.2190.219
200.2660.1250.2030.406
PWM
ACGT
010.344-1.037-0.6340.533
02-0.434-1.4390.7490.0
030.2110.462-0.268-0.884
040.3850.302-0.884-0.268
050.2110.302-0.751-0.06
06-0.6340.257-0.7510.533
07-1.7241.135-1.724-0.634
081.154-2.123-1.218-0.884
09-1.724-2.1231.292-2.797
100.721-0.7510.057-0.884
11-1.7241.173-2.797-0.634
12-2.123-2.123-1.2181.243
13-1.439-2.123-2.7971.276
14-1.4390.00.4240.211
15-1.218-1.218-0.4341.015
16-1.2181.208-1.439-2.123
17-0.4340.567-2.1230.385
18-1.218-0.884-0.1250.879
19-1.4390.692-0.125-0.125
200.057-0.634-0.1940.462
Standard thresholds
P-value Threshold
0.001 4.28016
0.0005 5.16836
0.0001 7.04121