ZNF32.H12INVIVO.0.SM.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF32.H12INVIVO.0.SM.D
Gene (human)	ZNF32 (GeneCards)
Gene synonyms (human)	KOX30
Gene (mouse)	Znf32
Gene synonyms (mouse)	Zfp637
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	15
Consensus	nbGWWACvYGAYAYv
GC content	46.21%
Information content (bits; total / per base)	13.366 / 0.891
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	1807

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.993	0.99	0.974	0.967	0.902	0.894
Overall, 2 experiments	best	0.998	0.996	0.99	0.987	0.937	0.931
Methyl HT-SELEX, 1 experiments	median	0.998	0.996	0.99	0.987	0.937	0.931
Methyl HT-SELEX, 1 experiments	best	0.998	0.996	0.99	0.987	0.937	0.931
Non-Methyl HT-SELEX, 1 experiments	median	0.989	0.984	0.958	0.946	0.866	0.857
Non-Methyl HT-SELEX, 1 experiments	best	0.989	0.984	0.958	0.946	0.866	0.857

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 2	0.739	0.355	0.747	0.559

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF32-like {2.3.3.41} (TFClass)
TFClass ID	TFClass: 2.3.3.41.1
HGNC	HGNC:13095
MGI	MGI:2448537
EntrezGene (human)	GeneID:7580 (SSTAR profile)
EntrezGene (mouse)	GeneID:232337 (SSTAR profile)
UniProt ID (human)	ZNF32_HUMAN
UniProt ID (mouse)	ZNF32_MOUSE
UniProt AC (human)	P17041 (TFClass)
UniProt AC (mouse)	Q80V23 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	ZNF32.H12INVIVO.0.SM.D.pcm
PWM	ZNF32.H12INVIVO.0.SM.D.pwm
PFM	ZNF32.H12INVIVO.0.SM.D.pfm
Alignment	ZNF32.H12INVIVO.0.SM.D.words.tsv
Threshold to P-value map	ZNF32.H12INVIVO.0.SM.D.thr
Motif in other formats
JASPAR format	ZNF32.H12INVIVO.0.SM.D_jaspar_format.txt
MEME format	ZNF32.H12INVIVO.0.SM.D_meme_format.meme
Transfac format	ZNF32.H12INVIVO.0.SM.D_transfac_format.txt
Homer format	ZNF32.H12INVIVO.0.SM.D_homer_format_0.001.txt ZNF32.H12INVIVO.0.SM.D_homer_format_0.0005.txt ZNF32.H12INVIVO.0.SM.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	516.5	433.5	564.5	292.5
02	105.25	663.25	308.25	730.25
03	44.0	24.0	1717.0	22.0
04	328.0	87.0	25.0	1367.0
05	1375.0	105.0	5.0	322.0
06	1779.0	5.0	6.0	17.0
07	13.0	1542.0	66.0	186.0
08	343.0	853.0	440.0	171.0
09	29.0	539.0	86.0	1153.0
10	169.0	18.0	1482.0	138.0
11	1735.0	13.0	11.0	48.0
12	71.0	417.0	112.0	1207.0
13	1445.0	293.0	48.0	21.0
14	116.5	1238.5	149.5	302.5
15	314.5	756.5	518.5	217.5

PFM

	A	C	G	T
01	0.286	0.24	0.312	0.162
02	0.058	0.367	0.171	0.404
03	0.024	0.013	0.95	0.012
04	0.182	0.048	0.014	0.757
05	0.761	0.058	0.003	0.178
06	0.985	0.003	0.003	0.009
07	0.007	0.853	0.037	0.103
08	0.19	0.472	0.243	0.095
09	0.016	0.298	0.048	0.638
10	0.094	0.01	0.82	0.076
11	0.96	0.007	0.006	0.027
12	0.039	0.231	0.062	0.668
13	0.8	0.162	0.027	0.012
14	0.064	0.685	0.083	0.167
15	0.174	0.419	0.287	0.12

PWM

	A	C	G	T
01	0.133	-0.041	0.222	-0.432
02	-1.443	0.383	-0.38	0.479
03	-2.291	-2.864	1.332	-2.944
04	-0.319	-1.63	-2.826	1.104
05	1.11	-1.446	-4.189	-0.337
06	1.368	-4.189	-4.054	-3.179
07	-3.418	1.225	-1.9	-0.881
08	-0.274	0.634	-0.026	-0.965
09	-2.687	0.176	-1.641	0.934
10	-0.976	-3.128	1.185	-1.177
11	1.343	-3.418	-3.562	-2.208
12	-1.829	-0.08	-1.382	0.98
13	1.16	-0.431	-2.208	-2.987
14	-1.343	1.006	-1.098	-0.399
15	-0.36	0.514	0.137	-0.726

Standard thresholds

P-value	Threshold
0.001	3.67306
0.0005	4.73691
0.0001	6.94076