ZNF32.H12INVITRO.0.SM.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF32.H12INVITRO.0.SM.B
Gene (human)	ZNF32 (GeneCards)
Gene synonyms (human)	KOX30
Gene (mouse)	Znf32
Gene synonyms (mouse)	Zfp637
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	15
Consensus	nbGWAACvYRAYMYv
GC content	46.46%
Information content (bits; total / per base)	12.511 / 0.834
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	7360

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.994	0.991	0.976	0.968	0.903	0.896
Overall, 2 experiments	best	0.998	0.997	0.991	0.987	0.938	0.933
Methyl HT-SELEX, 1 experiments	median	0.998	0.997	0.991	0.987	0.938	0.933
Methyl HT-SELEX, 1 experiments	best	0.998	0.997	0.991	0.987	0.938	0.933
Non-Methyl HT-SELEX, 1 experiments	median	0.99	0.985	0.961	0.949	0.868	0.859
Non-Methyl HT-SELEX, 1 experiments	best	0.99	0.985	0.961	0.949	0.868	0.859

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 2	0.738	0.342	0.738	0.552

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF32-like {2.3.3.41} (TFClass)
TFClass ID	TFClass: 2.3.3.41.1
HGNC	HGNC:13095
MGI	MGI:2448537
EntrezGene (human)	GeneID:7580 (SSTAR profile)
EntrezGene (mouse)	GeneID:232337 (SSTAR profile)
UniProt ID (human)	ZNF32_HUMAN
UniProt ID (mouse)	ZNF32_MOUSE
UniProt AC (human)	P17041 (TFClass)
UniProt AC (mouse)	Q80V23 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	ZNF32.H12INVITRO.0.SM.B.pcm
PWM	ZNF32.H12INVITRO.0.SM.B.pwm
PFM	ZNF32.H12INVITRO.0.SM.B.pfm
Alignment	ZNF32.H12INVITRO.0.SM.B.words.tsv
Threshold to P-value map	ZNF32.H12INVITRO.0.SM.B.thr
Motif in other formats
JASPAR format	ZNF32.H12INVITRO.0.SM.B_jaspar_format.txt
MEME format	ZNF32.H12INVITRO.0.SM.B_meme_format.meme
Transfac format	ZNF32.H12INVITRO.0.SM.B_transfac_format.txt
Homer format	ZNF32.H12INVITRO.0.SM.B_homer_format_0.001.txt ZNF32.H12INVITRO.0.SM.B_homer_format_0.0005.txt ZNF32.H12INVITRO.0.SM.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2054.0	1798.0	2207.0	1301.0
02	445.25	2468.25	1234.25	3212.25
03	153.0	125.0	6992.0	90.0
04	1412.0	373.0	94.0	5481.0
05	5695.0	541.0	24.0	1100.0
06	7262.0	21.0	23.0	54.0
07	54.0	6013.0	303.0	990.0
08	1480.0	3260.0	1808.0	812.0
09	171.0	2368.0	418.0	4403.0
10	841.0	130.0	5781.0	608.0
11	6993.0	110.0	94.0	163.0
12	288.0	1953.0	533.0	4586.0
13	5319.0	1613.0	284.0	144.0
14	574.0	4917.0	750.0	1119.0
15	1372.75	2899.75	2159.75	927.75

PFM

	A	C	G	T
01	0.279	0.244	0.3	0.177
02	0.06	0.335	0.168	0.436
03	0.021	0.017	0.95	0.012
04	0.192	0.051	0.013	0.745
05	0.774	0.074	0.003	0.149
06	0.987	0.003	0.003	0.007
07	0.007	0.817	0.041	0.135
08	0.201	0.443	0.246	0.11
09	0.023	0.322	0.057	0.598
10	0.114	0.018	0.785	0.083
11	0.95	0.015	0.013	0.022
12	0.039	0.265	0.072	0.623
13	0.723	0.219	0.039	0.02
14	0.078	0.668	0.102	0.152
15	0.187	0.394	0.293	0.126

PWM

	A	C	G	T
01	0.11	-0.023	0.182	-0.346
02	-1.415	0.293	-0.399	0.557
03	-2.474	-2.673	1.334	-2.994
04	-0.264	-1.591	-2.952	1.091
05	1.129	-1.221	-4.252	-0.514
06	1.372	-4.373	-4.291	-3.489
07	-3.489	1.183	-1.798	-0.619
08	-0.217	0.571	-0.018	-0.816
09	-2.364	0.252	-1.478	0.872
10	-0.781	-2.634	1.144	-1.105
11	1.334	-2.798	-2.952	-2.411
12	-1.848	0.06	-1.236	0.913
13	1.061	-0.131	-1.862	-2.534
14	-1.162	0.982	-0.896	-0.497
15	-0.293	0.454	0.16	-0.684

Standard thresholds

P-value	Threshold
0.001	3.96206
0.0005	4.98016
0.0001	7.07846