MotifZNF30.H12INVIVO.0.P.C
Gene (human)ZNF30
(GeneCards)
Gene synonyms (human)KOX28
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length23
ConsensusvnGRbKRbhSSMYTShdKYbYhb
GC content54.63%
Information content (bits; total / per base)12.736 / 0.554
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (5) 0.761 0.775 0.716 0.737 0.784 0.798 5.795 6.118 172.046 204.602
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF283-like {2.3.3.67} (TFClass)
TFClass IDTFClass: 2.3.3.67.6
HGNCHGNC:13090
MGI
EntrezGene (human)GeneID:90075
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZNF30_HUMAN
UniProt ID (mouse)
UniProt AC (human)P17039
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01258.0133.0529.080.0
02179.0101.0179.0541.0
0342.014.0872.072.0
04131.037.0748.084.0
0538.0245.0195.0522.0
0641.040.0219.0700.0
07154.066.0638.0142.0
0864.0252.0152.0532.0
09494.0141.078.0287.0
1084.0154.0713.049.0
1140.0204.0707.049.0
12726.0137.0111.026.0
1370.0670.036.0224.0
1442.026.063.0869.0
1525.0217.0718.040.0
16413.0212.091.0284.0
17248.043.0444.0265.0
1884.0128.0628.0160.0
1967.0197.0124.0612.0
20117.0497.0146.0240.0
21108.0642.046.0204.0
22168.0479.060.0293.0
23157.0272.0162.0409.0
PFM
ACGT
010.2580.1330.5290.08
020.1790.1010.1790.541
030.0420.0140.8720.072
040.1310.0370.7480.084
050.0380.2450.1950.522
060.0410.040.2190.7
070.1540.0660.6380.142
080.0640.2520.1520.532
090.4940.1410.0780.287
100.0840.1540.7130.049
110.040.2040.7070.049
120.7260.1370.1110.026
130.070.670.0360.224
140.0420.0260.0630.869
150.0250.2170.7180.04
160.4130.2120.0910.284
170.2480.0430.4440.265
180.0840.1280.6280.16
190.0670.1970.1240.612
200.1170.4970.1460.24
210.1080.6420.0460.204
220.1680.4790.060.293
230.1570.2720.1620.409
PWM
ACGT
010.031-0.6250.746-1.125
02-0.331-0.896-0.3310.768
03-1.75-2.7731.244-1.228
04-0.64-1.8721.091-1.077
05-1.846-0.02-0.2470.733
06-1.774-1.797-0.1311.025
07-0.48-1.3130.933-0.56
08-1.3430.008-0.4930.752
090.678-0.567-1.150.137
10-1.077-0.481.044-1.602
11-1.797-0.2021.035-1.602
121.062-0.596-0.803-2.206
13-1.2550.982-1.898-0.109
14-1.75-2.206-1.3581.241
15-2.243-0.1411.051-1.797
160.499-0.164-0.9990.127
17-0.008-1.7280.5710.058
18-1.077-0.6630.917-0.442
19-1.298-0.236-0.6940.891
20-0.7520.684-0.533-0.041
21-0.830.939-1.663-0.202
22-0.3940.647-1.4060.158
23-0.4610.084-0.430.49
Standard thresholds
P-value Threshold
0.001 4.11721
0.0005 5.01241
0.0001 6.91531