ZNF30.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF30.H12INVIVO.0.P.C
Gene (human)	ZNF30 (GeneCards)
Gene synonyms (human)	KOX28
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	vnGRbKRbhSSMYTShdKYbYhb
GC content	54.63%
Information content (bits; total / per base)	12.736 / 0.554
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.761	0.775	0.716	0.737	0.784	0.798	5.795	6.118	172.046	204.602

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF283-like {2.3.3.67} (TFClass)
TFClass ID	TFClass: 2.3.3.67.6
HGNC	HGNC:13090
MGI
EntrezGene (human)	GeneID:90075 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF30_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P17039 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF30.H12INVIVO.0.P.C.pcm
PWM	ZNF30.H12INVIVO.0.P.C.pwm
PFM	ZNF30.H12INVIVO.0.P.C.pfm
Alignment	ZNF30.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZNF30.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZNF30.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZNF30.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZNF30.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZNF30.H12INVIVO.0.P.C_homer_format_0.001.txt ZNF30.H12INVIVO.0.P.C_homer_format_0.0005.txt ZNF30.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	258.0	133.0	529.0	80.0
02	179.0	101.0	179.0	541.0
03	42.0	14.0	872.0	72.0
04	131.0	37.0	748.0	84.0
05	38.0	245.0	195.0	522.0
06	41.0	40.0	219.0	700.0
07	154.0	66.0	638.0	142.0
08	64.0	252.0	152.0	532.0
09	494.0	141.0	78.0	287.0
10	84.0	154.0	713.0	49.0
11	40.0	204.0	707.0	49.0
12	726.0	137.0	111.0	26.0
13	70.0	670.0	36.0	224.0
14	42.0	26.0	63.0	869.0
15	25.0	217.0	718.0	40.0
16	413.0	212.0	91.0	284.0
17	248.0	43.0	444.0	265.0
18	84.0	128.0	628.0	160.0
19	67.0	197.0	124.0	612.0
20	117.0	497.0	146.0	240.0
21	108.0	642.0	46.0	204.0
22	168.0	479.0	60.0	293.0
23	157.0	272.0	162.0	409.0

PFM

	A	C	G	T
01	0.258	0.133	0.529	0.08
02	0.179	0.101	0.179	0.541
03	0.042	0.014	0.872	0.072
04	0.131	0.037	0.748	0.084
05	0.038	0.245	0.195	0.522
06	0.041	0.04	0.219	0.7
07	0.154	0.066	0.638	0.142
08	0.064	0.252	0.152	0.532
09	0.494	0.141	0.078	0.287
10	0.084	0.154	0.713	0.049
11	0.04	0.204	0.707	0.049
12	0.726	0.137	0.111	0.026
13	0.07	0.67	0.036	0.224
14	0.042	0.026	0.063	0.869
15	0.025	0.217	0.718	0.04
16	0.413	0.212	0.091	0.284
17	0.248	0.043	0.444	0.265
18	0.084	0.128	0.628	0.16
19	0.067	0.197	0.124	0.612
20	0.117	0.497	0.146	0.24
21	0.108	0.642	0.046	0.204
22	0.168	0.479	0.06	0.293
23	0.157	0.272	0.162	0.409

PWM

	A	C	G	T
01	0.031	-0.625	0.746	-1.125
02	-0.331	-0.896	-0.331	0.768
03	-1.75	-2.773	1.244	-1.228
04	-0.64	-1.872	1.091	-1.077
05	-1.846	-0.02	-0.247	0.733
06	-1.774	-1.797	-0.131	1.025
07	-0.48	-1.313	0.933	-0.56
08	-1.343	0.008	-0.493	0.752
09	0.678	-0.567	-1.15	0.137
10	-1.077	-0.48	1.044	-1.602
11	-1.797	-0.202	1.035	-1.602
12	1.062	-0.596	-0.803	-2.206
13	-1.255	0.982	-1.898	-0.109
14	-1.75	-2.206	-1.358	1.241
15	-2.243	-0.141	1.051	-1.797
16	0.499	-0.164	-0.999	0.127
17	-0.008	-1.728	0.571	0.058
18	-1.077	-0.663	0.917	-0.442
19	-1.298	-0.236	-0.694	0.891
20	-0.752	0.684	-0.533	-0.041
21	-0.83	0.939	-1.663	-0.202
22	-0.394	0.647	-1.406	0.158
23	-0.461	0.084	-0.43	0.49

Standard thresholds

P-value	Threshold
0.001	4.11721
0.0005	5.01241
0.0001	6.91531