ZNF3.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF3.H12INVITRO.0.P.D
Gene (human)	ZNF3 (GeneCards)
Gene synonyms (human)	KOX25
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	hvdRdKYRhTGAnTGMvYvhndv
GC content	40.4%
Information content (bits; total / per base)	13.219 / 0.575
Data sources	ChIP-Seq
Aligned words	962

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (13)	0.597	0.804	0.53	0.744	0.58	0.836	3.065	5.837	10.921	203.237

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF3-like {2.3.3.34} (TFClass)
TFClass ID	TFClass: 2.3.3.34.1
HGNC	HGNC:13089
MGI
EntrezGene (human)	GeneID:7551 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF3_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P17036 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF3.H12INVITRO.0.P.D.pcm
PWM	ZNF3.H12INVITRO.0.P.D.pwm
PFM	ZNF3.H12INVITRO.0.P.D.pfm
Alignment	ZNF3.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZNF3.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZNF3.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZNF3.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZNF3.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZNF3.H12INVITRO.0.P.D_homer_format_0.001.txt ZNF3.H12INVITRO.0.P.D_homer_format_0.0005.txt ZNF3.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	503.0	148.0	145.0	166.0
02	416.0	149.0	290.0	107.0
03	138.0	127.0	131.0	566.0
04	193.0	41.0	643.0	85.0
05	156.0	95.0	159.0	552.0
06	41.0	96.0	156.0	669.0
07	93.0	125.0	58.0	686.0
08	116.0	45.0	699.0	102.0
09	134.0	220.0	62.0	546.0
10	83.0	37.0	45.0	797.0
11	84.0	37.0	820.0	21.0
12	852.0	15.0	40.0	55.0
13	291.0	222.0	229.0	220.0
14	65.0	50.0	44.0	803.0
15	49.0	12.0	864.0	37.0
16	646.0	234.0	55.0	27.0
17	451.0	359.0	88.0	64.0
18	132.0	147.0	53.0	630.0
19	311.0	184.0	336.0	131.0
20	550.0	141.0	96.0	175.0
21	289.0	298.0	192.0	183.0
22	192.0	123.0	158.0	489.0
23	191.0	103.0	567.0	101.0

PFM

	A	C	G	T
01	0.523	0.154	0.151	0.173
02	0.432	0.155	0.301	0.111
03	0.143	0.132	0.136	0.588
04	0.201	0.043	0.668	0.088
05	0.162	0.099	0.165	0.574
06	0.043	0.1	0.162	0.695
07	0.097	0.13	0.06	0.713
08	0.121	0.047	0.727	0.106
09	0.139	0.229	0.064	0.568
10	0.086	0.038	0.047	0.828
11	0.087	0.038	0.852	0.022
12	0.886	0.016	0.042	0.057
13	0.302	0.231	0.238	0.229
14	0.068	0.052	0.046	0.835
15	0.051	0.012	0.898	0.038
16	0.672	0.243	0.057	0.028
17	0.469	0.373	0.091	0.067
18	0.137	0.153	0.055	0.655
19	0.323	0.191	0.349	0.136
20	0.572	0.147	0.1	0.182
21	0.3	0.31	0.2	0.19
22	0.2	0.128	0.164	0.508
23	0.199	0.107	0.589	0.105

PWM

	A	C	G	T
01	0.734	-0.481	-0.501	-0.368
02	0.545	-0.474	0.186	-0.801
03	-0.55	-0.632	-0.602	0.852
04	-0.218	-1.735	0.979	-1.027
05	-0.429	-0.918	-0.41	0.827
06	-1.735	-0.908	-0.429	1.019
07	-0.939	-0.648	-1.4	1.044
08	-0.722	-1.646	1.062	-0.848
09	-0.579	-0.088	-1.335	0.816
10	-1.051	-1.834	-1.646	1.193
11	-1.039	-1.834	1.222	-2.367
12	1.26	-2.673	-1.759	-1.452
13	0.189	-0.079	-0.049	-0.088
14	-1.289	-1.544	-1.667	1.201
15	-1.564	-2.871	1.274	-1.834
16	0.984	-0.027	-1.452	-2.132
17	0.625	0.398	-0.993	-1.304
18	-0.594	-0.488	-1.488	0.959
19	0.255	-0.266	0.332	-0.602
20	0.823	-0.529	-0.908	-0.315
21	0.183	0.213	-0.223	-0.271
22	-0.223	-0.664	-0.416	0.706
23	-0.229	-0.839	0.854	-0.858

Standard thresholds

P-value	Threshold
0.001	3.99146
0.0005	4.90721
0.0001	6.85816