MotifZNF3.H12INVITRO.0.P.D
Gene (human)ZNF3
(GeneCards)
Gene synonyms (human)KOX25
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length23
ConsensushvdRdKYRhTGAnTGMvYvhndv
GC content40.4%
Information content (bits; total / per base)13.219 / 0.575
Data sourcesChIP-Seq
Aligned words962

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (13) 0.597 0.804 0.53 0.744 0.58 0.836 3.065 5.837 10.921 203.237
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF3-like {2.3.3.34} (TFClass)
TFClass IDTFClass: 2.3.3.34.1
HGNCHGNC:13089
MGI
EntrezGene (human)GeneID:7551
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZNF3_HUMAN
UniProt ID (mouse)
UniProt AC (human)P17036
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01503.0148.0145.0166.0
02416.0149.0290.0107.0
03138.0127.0131.0566.0
04193.041.0643.085.0
05156.095.0159.0552.0
0641.096.0156.0669.0
0793.0125.058.0686.0
08116.045.0699.0102.0
09134.0220.062.0546.0
1083.037.045.0797.0
1184.037.0820.021.0
12852.015.040.055.0
13291.0222.0229.0220.0
1465.050.044.0803.0
1549.012.0864.037.0
16646.0234.055.027.0
17451.0359.088.064.0
18132.0147.053.0630.0
19311.0184.0336.0131.0
20550.0141.096.0175.0
21289.0298.0192.0183.0
22192.0123.0158.0489.0
23191.0103.0567.0101.0
PFM
ACGT
010.5230.1540.1510.173
020.4320.1550.3010.111
030.1430.1320.1360.588
040.2010.0430.6680.088
050.1620.0990.1650.574
060.0430.10.1620.695
070.0970.130.060.713
080.1210.0470.7270.106
090.1390.2290.0640.568
100.0860.0380.0470.828
110.0870.0380.8520.022
120.8860.0160.0420.057
130.3020.2310.2380.229
140.0680.0520.0460.835
150.0510.0120.8980.038
160.6720.2430.0570.028
170.4690.3730.0910.067
180.1370.1530.0550.655
190.3230.1910.3490.136
200.5720.1470.10.182
210.30.310.20.19
220.20.1280.1640.508
230.1990.1070.5890.105
PWM
ACGT
010.734-0.481-0.501-0.368
020.545-0.4740.186-0.801
03-0.55-0.632-0.6020.852
04-0.218-1.7350.979-1.027
05-0.429-0.918-0.410.827
06-1.735-0.908-0.4291.019
07-0.939-0.648-1.41.044
08-0.722-1.6461.062-0.848
09-0.579-0.088-1.3350.816
10-1.051-1.834-1.6461.193
11-1.039-1.8341.222-2.367
121.26-2.673-1.759-1.452
130.189-0.079-0.049-0.088
14-1.289-1.544-1.6671.201
15-1.564-2.8711.274-1.834
160.984-0.027-1.452-2.132
170.6250.398-0.993-1.304
18-0.594-0.488-1.4880.959
190.255-0.2660.332-0.602
200.823-0.529-0.908-0.315
210.1830.213-0.223-0.271
22-0.223-0.664-0.4160.706
23-0.229-0.8390.854-0.858
Standard thresholds
P-value Threshold
0.001 3.99146
0.0005 4.90721
0.0001 6.85816