MotifZNF28.H12INVIVO.0.P.C
Gene (human)ZNF28
(GeneCards)
Gene synonyms (human)KOX24
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length18
ConsensusdvdRnndvhGGGGTGSYh
GC content69.48%
Information content (bits; total / per base)13.732 / 0.763
Data sourcesChIP-Seq
Aligned words1002

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (2) 0.824 0.825 0.729 0.733 0.831 0.832 3.717 3.723 228.372 229.523
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF816A-like {2.3.3.73} (TFClass)
TFClass IDTFClass: 2.3.3.73.2
HGNCHGNC:13073
MGI
EntrezGene (human)GeneID:7576
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZNF28_HUMAN
UniProt ID (mouse)
UniProt AC (human)P17035
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01212.0121.0482.0187.0
02172.0128.0578.0124.0
03151.077.0543.0231.0
04112.086.0744.060.0
05162.0368.0249.0223.0
06315.0136.0310.0241.0
07163.066.0489.0284.0
08199.0166.0551.086.0
09197.0179.0137.0489.0
1029.09.0925.039.0
1161.020.0909.012.0
1214.01.0963.024.0
1325.018.0950.09.0
1446.043.019.0894.0
1511.010.0934.047.0
1627.0667.0192.0116.0
1753.0806.065.078.0
18161.0510.081.0250.0
PFM
ACGT
010.2120.1210.4810.187
020.1720.1280.5770.124
030.1510.0770.5420.231
040.1120.0860.7430.06
050.1620.3670.2490.223
060.3140.1360.3090.241
070.1630.0660.4880.283
080.1990.1660.550.086
090.1970.1790.1370.488
100.0290.0090.9230.039
110.0610.020.9070.012
120.0140.0010.9610.024
130.0250.0180.9480.009
140.0460.0430.0190.892
150.0110.010.9320.047
160.0270.6660.1920.116
170.0530.8040.0650.078
180.1610.5090.0810.25
PWM
ACGT
01-0.166-0.720.651-0.29
02-0.373-0.6650.832-0.696
03-0.502-1.1640.77-0.08
04-0.797-1.0561.084-1.408
05-0.4320.382-0.006-0.115
060.228-0.6050.212-0.038
07-0.426-1.3150.6660.125
08-0.228-0.4080.785-1.056
09-0.238-0.333-0.5980.666
10-2.105-3.1581.301-1.823
11-1.392-2.4521.284-2.911
12-2.775-4.5271.342-2.283
13-2.245-2.5481.328-3.158
14-1.665-1.73-2.4991.267
15-2.987-3.0681.311-1.644
16-2.1720.975-0.264-0.762
17-1.5281.164-1.33-1.152
18-0.4380.707-1.115-0.002
Standard thresholds
P-value Threshold
0.001 3.68156
0.0005 4.70316
0.0001 6.84856