ZNF28.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF28.H12INVITRO.0.P.D
Gene (human)	ZNF28 (GeneCards)
Gene synonyms (human)	KOX24
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	18
Consensus	dvdRnndvhGGGGTGSYh
GC content	69.48%
Information content (bits; total / per base)	13.732 / 0.763
Data sources	ChIP-Seq
Aligned words	1002

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.824	0.825	0.729	0.733	0.831	0.832	3.717	3.723	228.372	229.523

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF816A-like {2.3.3.73} (TFClass)
TFClass ID	TFClass: 2.3.3.73.2
HGNC	HGNC:13073
MGI
EntrezGene (human)	GeneID:7576 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF28_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P17035 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF28.H12INVITRO.0.P.D.pcm
PWM	ZNF28.H12INVITRO.0.P.D.pwm
PFM	ZNF28.H12INVITRO.0.P.D.pfm
Alignment	ZNF28.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZNF28.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZNF28.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZNF28.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZNF28.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZNF28.H12INVITRO.0.P.D_homer_format_0.001.txt ZNF28.H12INVITRO.0.P.D_homer_format_0.0005.txt ZNF28.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	212.0	121.0	482.0	187.0
02	172.0	128.0	578.0	124.0
03	151.0	77.0	543.0	231.0
04	112.0	86.0	744.0	60.0
05	162.0	368.0	249.0	223.0
06	315.0	136.0	310.0	241.0
07	163.0	66.0	489.0	284.0
08	199.0	166.0	551.0	86.0
09	197.0	179.0	137.0	489.0
10	29.0	9.0	925.0	39.0
11	61.0	20.0	909.0	12.0
12	14.0	1.0	963.0	24.0
13	25.0	18.0	950.0	9.0
14	46.0	43.0	19.0	894.0
15	11.0	10.0	934.0	47.0
16	27.0	667.0	192.0	116.0
17	53.0	806.0	65.0	78.0
18	161.0	510.0	81.0	250.0

PFM

	A	C	G	T
01	0.212	0.121	0.481	0.187
02	0.172	0.128	0.577	0.124
03	0.151	0.077	0.542	0.231
04	0.112	0.086	0.743	0.06
05	0.162	0.367	0.249	0.223
06	0.314	0.136	0.309	0.241
07	0.163	0.066	0.488	0.283
08	0.199	0.166	0.55	0.086
09	0.197	0.179	0.137	0.488
10	0.029	0.009	0.923	0.039
11	0.061	0.02	0.907	0.012
12	0.014	0.001	0.961	0.024
13	0.025	0.018	0.948	0.009
14	0.046	0.043	0.019	0.892
15	0.011	0.01	0.932	0.047
16	0.027	0.666	0.192	0.116
17	0.053	0.804	0.065	0.078
18	0.161	0.509	0.081	0.25

PWM

	A	C	G	T
01	-0.166	-0.72	0.651	-0.29
02	-0.373	-0.665	0.832	-0.696
03	-0.502	-1.164	0.77	-0.08
04	-0.797	-1.056	1.084	-1.408
05	-0.432	0.382	-0.006	-0.115
06	0.228	-0.605	0.212	-0.038
07	-0.426	-1.315	0.666	0.125
08	-0.228	-0.408	0.785	-1.056
09	-0.238	-0.333	-0.598	0.666
10	-2.105	-3.158	1.301	-1.823
11	-1.392	-2.452	1.284	-2.911
12	-2.775	-4.527	1.342	-2.283
13	-2.245	-2.548	1.328	-3.158
14	-1.665	-1.73	-2.499	1.267
15	-2.987	-3.068	1.311	-1.644
16	-2.172	0.975	-0.264	-0.762
17	-1.528	1.164	-1.33	-1.152
18	-0.438	0.707	-1.115	-0.002

Standard thresholds

P-value	Threshold
0.001	3.68156
0.0005	4.70316
0.0001	6.84856