ZNF26.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF26.H12INVIVO.0.P.B
Gene (human)	ZNF26 (GeneCards)
Gene synonyms (human)	KOX20
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	23
Consensus	ATGWCYRRMAYhYARYMRAAAAT
GC content	34.18%
Information content (bits; total / per base)	22.845 / 0.993
Data sources	ChIP-Seq
Aligned words	209

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (11)	0.908	0.977	0.897	0.967	0.903	0.974	8.003	10.879	430.569	498.0

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF26-like {2.3.3.70} (TFClass)
TFClass ID	TFClass: 2.3.3.70.1
HGNC	HGNC:13053
MGI
EntrezGene (human)	GeneID:7574 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF26_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P17031 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF26.H12INVIVO.0.P.B.pcm
PWM	ZNF26.H12INVIVO.0.P.B.pwm
PFM	ZNF26.H12INVIVO.0.P.B.pfm
Alignment	ZNF26.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	ZNF26.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ZNF26.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	ZNF26.H12INVIVO.0.P.B_meme_format.meme
Transfac format	ZNF26.H12INVIVO.0.P.B_transfac_format.txt
Homer format	ZNF26.H12INVIVO.0.P.B_homer_format_0.001.txt ZNF26.H12INVIVO.0.P.B_homer_format_0.0005.txt ZNF26.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	193.0	4.0	6.0	6.0
02	2.0	0.0	0.0	207.0
03	4.0	1.0	202.0	2.0
04	38.0	26.0	4.0	141.0
05	6.0	187.0	8.0	8.0
06	27.0	89.0	2.0	91.0
07	156.0	8.0	37.0	8.0
08	38.0	12.0	137.0	22.0
09	28.0	149.0	12.0	20.0
10	184.0	3.0	3.0	19.0
11	0.0	86.0	5.0	118.0
12	101.0	48.0	18.0	42.0
13	20.0	130.0	14.0	45.0
14	186.0	7.0	7.0	9.0
15	137.0	12.0	46.0	14.0
16	27.0	51.0	5.0	126.0
17	45.0	136.0	12.0	16.0
18	140.0	21.0	40.0	8.0
19	173.0	9.0	25.0	2.0
20	167.0	22.0	9.0	11.0
21	180.0	1.0	26.0	2.0
22	180.0	14.0	4.0	11.0
23	8.0	2.0	3.0	196.0

PFM

	A	C	G	T
01	0.923	0.019	0.029	0.029
02	0.01	0.0	0.0	0.99
03	0.019	0.005	0.967	0.01
04	0.182	0.124	0.019	0.675
05	0.029	0.895	0.038	0.038
06	0.129	0.426	0.01	0.435
07	0.746	0.038	0.177	0.038
08	0.182	0.057	0.656	0.105
09	0.134	0.713	0.057	0.096
10	0.88	0.014	0.014	0.091
11	0.0	0.411	0.024	0.565
12	0.483	0.23	0.086	0.201
13	0.096	0.622	0.067	0.215
14	0.89	0.033	0.033	0.043
15	0.656	0.057	0.22	0.067
16	0.129	0.244	0.024	0.603
17	0.215	0.651	0.057	0.077
18	0.67	0.1	0.191	0.038
19	0.828	0.043	0.12	0.01
20	0.799	0.105	0.043	0.053
21	0.861	0.005	0.124	0.01
22	0.861	0.067	0.019	0.053
23	0.038	0.01	0.014	0.938

PWM

	A	C	G	T
01	1.288	-2.307	-1.989	-1.989
02	-2.777	-3.692	-3.692	1.358
03	-2.307	-3.133	1.334	-2.777
04	-0.309	-0.673	-2.307	0.977
05	-1.989	1.257	-1.747	-1.747
06	-0.637	0.522	-2.777	0.544
07	1.077	-1.747	-0.335	-1.747
08	-0.309	-1.391	0.948	-0.831
09	-0.602	1.032	-1.391	-0.921
10	1.241	-2.514	-2.514	-0.969
11	-3.692	0.488	-2.135	0.801
12	0.647	-0.083	-1.019	-0.212
13	-0.921	0.896	-1.251	-0.145
14	1.252	-1.861	-1.861	-1.646
15	0.948	-1.391	-0.124	-1.251
16	-0.637	-0.024	-2.135	0.866
17	-0.145	0.941	-1.391	-1.129
18	0.97	-0.875	-0.26	-1.747
19	1.18	-1.646	-0.71	-2.777
20	1.145	-0.831	-1.646	-1.469
21	1.219	-3.133	-0.673	-2.777
22	1.219	-1.251	-2.307	-1.469
23	-1.747	-2.777	-2.514	1.304

Standard thresholds

P-value	Threshold
0.001	0.48236
0.0005	1.80121
0.0001	4.61876