ZNF24.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF24.H12INVIVO.0.P.B
Gene (human)	ZNF24 (GeneCards)
Gene synonyms (human)	KOX17, ZNF191, ZSCAN3
Gene (mouse)	Znf24
Gene synonyms (mouse)	Hmcns, Zfp191, Zfp24
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	14
Consensus	TGAATGAATGAATG
GC content	31.48%
Information content (bits; total / per base)	21.534 / 1.538
Data sources	ChIP-Seq
Aligned words	597

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	9 (62)	0.799	0.974	0.743	0.95	0.776	0.983	6.082	9.835	126.432	325.086

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF24-like {2.3.3.10} (TFClass)
TFClass ID	TFClass: 2.3.3.10.1
HGNC	HGNC:13032
MGI	MGI:1929704
EntrezGene (human)	GeneID:7572 (SSTAR profile)
EntrezGene (mouse)	GeneID:59057 (SSTAR profile)
UniProt ID (human)	ZNF24_HUMAN
UniProt ID (mouse)	ZNF24_MOUSE
UniProt AC (human)	P17028 (TFClass)
UniProt AC (mouse)	Q91VN1 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	9 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF24.H12INVIVO.0.P.B.pcm
PWM	ZNF24.H12INVIVO.0.P.B.pwm
PFM	ZNF24.H12INVIVO.0.P.B.pfm
Alignment	ZNF24.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	ZNF24.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ZNF24.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	ZNF24.H12INVIVO.0.P.B_meme_format.meme
Transfac format	ZNF24.H12INVIVO.0.P.B_transfac_format.txt
Homer format	ZNF24.H12INVIVO.0.P.B_homer_format_0.001.txt ZNF24.H12INVIVO.0.P.B_homer_format_0.0005.txt ZNF24.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	16.0	2.0	63.0	516.0
02	9.0	2.0	582.0	4.0
03	581.0	3.0	5.0	8.0
04	566.0	2.0	6.0	23.0
05	2.0	50.0	25.0	520.0
06	57.0	4.0	523.0	13.0
07	597.0	0.0	0.0	0.0
08	557.0	3.0	36.0	1.0
09	9.0	13.0	3.0	572.0
10	6.0	13.0	574.0	4.0
11	552.0	37.0	5.0	3.0
12	488.0	16.0	65.0	28.0
13	16.0	7.0	44.0	530.0
14	3.0	19.0	529.0	46.0

PFM

	A	C	G	T
01	0.027	0.003	0.106	0.864
02	0.015	0.003	0.975	0.007
03	0.973	0.005	0.008	0.013
04	0.948	0.003	0.01	0.039
05	0.003	0.084	0.042	0.871
06	0.095	0.007	0.876	0.022
07	1.0	0.0	0.0	0.0
08	0.933	0.005	0.06	0.002
09	0.015	0.022	0.005	0.958
10	0.01	0.022	0.961	0.007
11	0.925	0.062	0.008	0.005
12	0.817	0.027	0.109	0.047
13	0.027	0.012	0.074	0.888
14	0.005	0.032	0.886	0.077

PWM

	A	C	G	T
01	-2.148	-3.736	-0.848	1.233
02	-2.656	-3.736	1.353	-3.294
03	1.351	-3.491	-3.13	-2.755
04	1.325	-3.736	-2.988	-1.814
05	-3.736	-1.073	-1.735	1.241
06	-0.946	-3.294	1.246	-2.335
07	1.378	-4.548	-4.548	-4.548
08	1.309	-3.491	-1.389	-4.062
09	-2.656	-2.335	-3.491	1.336
10	-2.988	-2.335	1.339	-3.294
11	1.3	-1.363	-3.13	-3.491
12	1.177	-2.148	-0.818	-1.629
13	-2.148	-2.865	-1.196	1.26
14	-3.491	-1.991	1.258	-1.153

Standard thresholds

P-value	Threshold
0.001	-0.54394
0.0005	0.94016
0.0001	4.09391