ZNF23.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF23.H12INVIVO.0.P.C
Gene (human)	ZNF23 (GeneCards)
Gene synonyms (human)	KOX16, ZNF359, ZNF612
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	24
Consensus	YChYRRCAGACATbRYYAAWYvAY
GC content	44.72%
Information content (bits; total / per base)	22.143 / 0.923
Data sources	ChIP-Seq
Aligned words	240

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (6)	0.93	0.964	0.93	0.959	0.941	0.977	15.101	16.497	76.0	128.0

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.210
HGNC	HGNC:13023
MGI
EntrezGene (human)	GeneID:7571 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF23_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P17027 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF23.H12INVIVO.0.P.C.pcm
PWM	ZNF23.H12INVIVO.0.P.C.pwm
PFM	ZNF23.H12INVIVO.0.P.C.pfm
Alignment	ZNF23.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZNF23.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZNF23.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZNF23.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZNF23.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZNF23.H12INVIVO.0.P.C_homer_format_0.001.txt ZNF23.H12INVIVO.0.P.C_homer_format_0.0005.txt ZNF23.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	10.0	179.0	14.0	37.0
02	12.0	198.0	9.0	21.0
03	131.0	45.0	31.0	33.0
04	24.0	38.0	30.0	148.0
05	60.0	9.0	152.0	19.0
06	26.0	16.0	182.0	16.0
07	13.0	219.0	7.0	1.0
08	209.0	6.0	5.0	20.0
09	26.0	3.0	206.0	5.0
10	205.0	7.0	22.0	6.0
11	13.0	224.0	2.0	1.0
12	229.0	3.0	1.0	7.0
13	4.0	13.0	14.0	209.0
14	21.0	128.0	31.0	60.0
15	177.0	6.0	41.0	16.0
16	21.0	176.0	17.0	26.0
17	22.0	31.0	22.0	165.0
18	208.0	20.0	4.0	8.0
19	200.0	9.0	29.0	2.0
20	29.0	17.0	13.0	181.0
21	11.0	158.0	29.0	42.0
22	118.0	36.0	74.0	12.0
23	193.0	32.0	8.0	7.0
24	24.0	36.0	24.0	156.0

PFM

	A	C	G	T
01	0.042	0.746	0.058	0.154
02	0.05	0.825	0.038	0.088
03	0.546	0.188	0.129	0.138
04	0.1	0.158	0.125	0.617
05	0.25	0.038	0.633	0.079
06	0.108	0.067	0.758	0.067
07	0.054	0.913	0.029	0.004
08	0.871	0.025	0.021	0.083
09	0.108	0.013	0.858	0.021
10	0.854	0.029	0.092	0.025
11	0.054	0.933	0.008	0.004
12	0.954	0.013	0.004	0.029
13	0.017	0.054	0.058	0.871
14	0.088	0.533	0.129	0.25
15	0.738	0.025	0.171	0.067
16	0.088	0.733	0.071	0.108
17	0.092	0.129	0.092	0.688
18	0.867	0.083	0.017	0.033
19	0.833	0.038	0.121	0.008
20	0.121	0.071	0.054	0.754
21	0.046	0.658	0.121	0.175
22	0.492	0.15	0.308	0.05
23	0.804	0.133	0.033	0.029
24	0.1	0.15	0.1	0.65

PWM

	A	C	G	T
01	-1.686	1.078	-1.384	-0.47
02	-1.524	1.178	-1.778	-1.009
03	0.769	-0.28	-0.64	-0.58
04	-0.883	-0.444	-0.671	0.89
05	0.0	-1.778	0.916	-1.103
06	-0.807	-1.262	1.095	-1.262
07	-1.452	1.278	-1.992	-3.254
08	1.232	-2.119	-2.265	-1.055
09	-0.807	-2.642	1.218	-2.265
10	1.213	-1.992	-0.965	-2.119
11	-1.452	1.301	-2.902	-3.254
12	1.323	-2.642	-3.254	-1.992
13	-2.436	-1.452	-1.384	1.232
14	-1.009	0.746	-0.64	0.0
15	1.067	-2.119	-0.37	-1.262
16	-1.009	1.061	-1.206	-0.807
17	-0.965	-0.64	-0.965	0.997
18	1.227	-1.055	-2.436	-1.879
19	1.188	-1.778	-0.703	-2.902
20	-0.703	-1.206	-1.452	1.089
21	-1.602	0.954	-0.703	-0.347
22	0.665	-0.496	0.205	-1.524
23	1.153	-0.609	-1.879	-1.992
24	-0.883	-0.496	-0.883	0.942

Standard thresholds

P-value	Threshold
0.001	1.09446
0.0005	2.33101
0.0001	4.98251