ZNF18.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF18.H12INVIVO.0.P.B
Gene (human)	ZNF18 (GeneCards)
Gene synonyms (human)	HDSG1, KOX11, ZKSCAN6, ZNF535
Gene (mouse)	Znf18
Gene synonyms (mouse)	Zfp535, Zkscan6
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	12
Consensus	RGTGTGARYhbd
GC content	53.7%
Information content (bits; total / per base)	13.655 / 1.138
Data sources	ChIP-Seq
Aligned words	1001

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (21)	0.887	0.935	0.753	0.855	0.91	0.97	4.159	4.729	183.678	480.721

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	15.637	3.214	0.32	0.194

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.20
HGNC	HGNC:12969
MGI	MGI:1289293
EntrezGene (human)	GeneID:7566 (SSTAR profile)
EntrezGene (mouse)	GeneID:52712 (SSTAR profile)
UniProt ID (human)	ZNF18_HUMAN
UniProt ID (mouse)	ZNF18_MOUSE
UniProt AC (human)	P17022 (TFClass)
UniProt AC (mouse)	Q810A1 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF18.H12INVIVO.0.P.B.pcm
PWM	ZNF18.H12INVIVO.0.P.B.pwm
PFM	ZNF18.H12INVIVO.0.P.B.pfm
Alignment	ZNF18.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	ZNF18.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ZNF18.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	ZNF18.H12INVIVO.0.P.B_meme_format.meme
Transfac format	ZNF18.H12INVIVO.0.P.B_transfac_format.txt
Homer format	ZNF18.H12INVIVO.0.P.B_homer_format_0.001.txt ZNF18.H12INVIVO.0.P.B_homer_format_0.0005.txt ZNF18.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	253.0	3.0	676.0	69.0
02	3.0	2.0	993.0	3.0
03	4.0	2.0	5.0	990.0
04	6.0	0.0	995.0	0.0
05	33.0	1.0	80.0	887.0
06	7.0	0.0	993.0	1.0
07	959.0	13.0	0.0	29.0
08	768.0	29.0	141.0	63.0
09	5.0	637.0	130.0	229.0
10	217.0	309.0	133.0	342.0
11	99.0	269.0	401.0	232.0
12	166.0	129.0	510.0	196.0

PFM

	A	C	G	T
01	0.253	0.003	0.675	0.069
02	0.003	0.002	0.992	0.003
03	0.004	0.002	0.005	0.989
04	0.006	0.0	0.994	0.0
05	0.033	0.001	0.08	0.886
06	0.007	0.0	0.992	0.001
07	0.958	0.013	0.0	0.029
08	0.767	0.029	0.141	0.063
09	0.005	0.636	0.13	0.229
10	0.217	0.309	0.133	0.342
11	0.099	0.269	0.401	0.232
12	0.166	0.129	0.509	0.196

PWM

	A	C	G	T
01	0.011	-3.976	0.989	-1.271
02	-3.976	-4.214	1.373	-3.976
03	-3.784	-4.214	-3.623	1.37
04	-3.485	-4.983	1.375	-4.983
05	-1.982	-4.526	-1.126	1.26
06	-3.363	-4.983	1.373	-4.526
07	1.338	-2.84	-4.983	-2.104
08	1.117	-2.104	-0.568	-1.359
09	-3.623	0.93	-0.649	-0.088
10	-0.142	0.21	-0.626	0.311
11	-0.917	0.072	0.469	-0.075
12	-0.407	-0.656	0.708	-0.242

Standard thresholds

P-value	Threshold
0.001	3.103275
0.0005	4.345715
0.0001	6.95585