MotifZNF18.H12INVITRO.0.P.D
Gene (human)ZNF18
(GeneCards)
Gene synonyms (human)HDSG1, KOX11, ZKSCAN6, ZNF535
Gene (mouse)Znf18
Gene synonyms (mouse)Zfp535, Zkscan6
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length9
ConsensusRGTGTGARY
GC content51.44%
Information content (bits; total / per base)12.934 / 1.437
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 4 (21) 0.882 0.928 0.732 0.835 0.911 0.964 3.726 4.139 181.022 454.658

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 100.0 4.309 0.345 0.225
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.20
HGNCHGNC:12969
MGIMGI:1289293
EntrezGene (human)GeneID:7566
(SSTAR profile)
EntrezGene (mouse)GeneID:52712
(SSTAR profile)
UniProt ID (human)ZNF18_HUMAN
UniProt ID (mouse)ZNF18_MOUSE
UniProt AC (human)P17022
(TFClass)
UniProt AC (mouse)Q810A1
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 4 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01311.03.0601.085.0
025.02.0992.01.0
036.01.00.0993.0
041.02.0997.00.0
0546.02.0122.0830.0
0618.00.0982.00.0
07967.016.00.017.0
08786.016.0132.066.0
099.0609.0153.0229.0
PFM
ACGT
010.3110.0030.6010.085
020.0050.0020.9920.001
030.0060.0010.00.993
040.0010.0020.9970.0
050.0460.0020.1220.83
060.0180.00.9820.0
070.9670.0160.00.017
080.7860.0160.1320.066
090.0090.6090.1530.229
PWM
ACGT
010.217-3.9750.873-1.066
02-3.622-4.2131.373-4.525
03-3.484-4.525-4.9821.374
04-4.525-4.2131.378-4.982
05-1.663-4.213-0.711.195
06-2.546-4.9821.363-4.982
071.348-2.653-4.982-2.598
081.141-2.653-0.633-1.313
09-3.1560.886-0.487-0.087
Standard thresholds
P-value Threshold
0.001 3.31955
0.0005 4.57267
0.0001 7.138275