| Motif | ZNF18.H12INVITRO.0.P.D |
| Gene (human) | ZNF18 (GeneCards) |
| Gene synonyms (human) | HDSG1, KOX11, ZKSCAN6, ZNF535 |
| Gene (mouse) | Znf18 |
| Gene synonyms (mouse) | Zfp535, Zkscan6 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | ZNF18.H12INVITRO.0.P.D |
| Gene (human) | ZNF18 (GeneCards) |
| Gene synonyms (human) | HDSG1, KOX11, ZKSCAN6, ZNF535 |
| Gene (mouse) | Znf18 |
| Gene synonyms (mouse) | Zfp535, Zkscan6 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 9 |
| Consensus | RGTGTGARY |
| GC content | 51.44% |
| Information content (bits; total / per base) | 12.934 / 1.437 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 4 (21) | 0.882 | 0.928 | 0.732 | 0.835 | 0.911 | 0.964 | 3.726 | 4.139 | 181.022 | 454.658 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 100.0 | 4.309 | 0.345 | 0.225 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | Unclassified {2.3.3.0} (TFClass) |
| TFClass ID | TFClass: 2.3.3.0.20 |
| HGNC | HGNC:12969 |
| MGI | MGI:1289293 |
| EntrezGene (human) | GeneID:7566 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:52712 (SSTAR profile) |
| UniProt ID (human) | ZNF18_HUMAN |
| UniProt ID (mouse) | ZNF18_MOUSE |
| UniProt AC (human) | P17022 (TFClass) |
| UniProt AC (mouse) | Q810A1 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 4 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | ZNF18.H12INVITRO.0.P.D.pcm |
| PWM | ZNF18.H12INVITRO.0.P.D.pwm |
| PFM | ZNF18.H12INVITRO.0.P.D.pfm |
| Alignment | ZNF18.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | ZNF18.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | ZNF18.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | ZNF18.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | ZNF18.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 311.0 | 3.0 | 601.0 | 85.0 |
| 02 | 5.0 | 2.0 | 992.0 | 1.0 |
| 03 | 6.0 | 1.0 | 0.0 | 993.0 |
| 04 | 1.0 | 2.0 | 997.0 | 0.0 |
| 05 | 46.0 | 2.0 | 122.0 | 830.0 |
| 06 | 18.0 | 0.0 | 982.0 | 0.0 |
| 07 | 967.0 | 16.0 | 0.0 | 17.0 |
| 08 | 786.0 | 16.0 | 132.0 | 66.0 |
| 09 | 9.0 | 609.0 | 153.0 | 229.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.311 | 0.003 | 0.601 | 0.085 |
| 02 | 0.005 | 0.002 | 0.992 | 0.001 |
| 03 | 0.006 | 0.001 | 0.0 | 0.993 |
| 04 | 0.001 | 0.002 | 0.997 | 0.0 |
| 05 | 0.046 | 0.002 | 0.122 | 0.83 |
| 06 | 0.018 | 0.0 | 0.982 | 0.0 |
| 07 | 0.967 | 0.016 | 0.0 | 0.017 |
| 08 | 0.786 | 0.016 | 0.132 | 0.066 |
| 09 | 0.009 | 0.609 | 0.153 | 0.229 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.217 | -3.975 | 0.873 | -1.066 |
| 02 | -3.622 | -4.213 | 1.373 | -4.525 |
| 03 | -3.484 | -4.525 | -4.982 | 1.374 |
| 04 | -4.525 | -4.213 | 1.378 | -4.982 |
| 05 | -1.663 | -4.213 | -0.71 | 1.195 |
| 06 | -2.546 | -4.982 | 1.363 | -4.982 |
| 07 | 1.348 | -2.653 | -4.982 | -2.598 |
| 08 | 1.141 | -2.653 | -0.633 | -1.313 |
| 09 | -3.156 | 0.886 | -0.487 | -0.087 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.31955 |
| 0.0005 | 4.57267 |
| 0.0001 | 7.138275 |