ZNF16.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF16.H12INVITRO.0.P.D
Gene (human)	ZNF16 (GeneCards)
Gene synonyms (human)	HZF1, KOX9
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	dCCYKChRTGGCTCCChvbKdCY
GC content	60.75%
Information content (bits; total / per base)	23.283 / 1.012
Data sources	ChIP-Seq
Aligned words	807

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (7)	0.956	0.992	0.948	0.988	0.96	0.994	10.332	12.1	500.268	584.921

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.204
HGNC	HGNC:12947
MGI
EntrezGene (human)	GeneID:7564 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF16_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P17020 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZNF16.H12INVITRO.0.P.D.pcm
PWM	ZNF16.H12INVITRO.0.P.D.pwm
PFM	ZNF16.H12INVITRO.0.P.D.pfm
Alignment	ZNF16.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZNF16.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZNF16.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZNF16.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZNF16.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZNF16.H12INVITRO.0.P.D_homer_format_0.001.txt ZNF16.H12INVITRO.0.P.D_homer_format_0.0005.txt ZNF16.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	461.0	80.0	177.0	89.0
02	27.0	660.0	28.0	92.0
03	67.0	645.0	10.0	85.0
04	74.0	272.0	27.0	434.0
05	41.0	97.0	137.0	532.0
06	15.0	736.0	17.0	39.0
07	160.0	422.0	21.0	204.0
08	518.0	60.0	190.0	39.0
09	8.0	23.0	25.0	751.0
10	97.0	7.0	688.0	15.0
11	29.0	18.0	749.0	11.0
12	5.0	786.0	2.0	14.0
13	5.0	4.0	1.0	797.0
14	1.0	777.0	20.0	9.0
15	25.0	755.0	11.0	16.0
16	3.0	783.0	1.0	20.0
17	204.0	269.0	21.0	313.0
18	467.0	179.0	98.0	63.0
19	22.0	257.0	201.0	327.0
20	26.0	68.0	100.0	613.0
21	136.0	122.0	423.0	126.0
22	35.0	687.0	21.0	64.0
23	42.0	586.0	15.0	164.0

PFM

	A	C	G	T
01	0.571	0.099	0.219	0.11
02	0.033	0.818	0.035	0.114
03	0.083	0.799	0.012	0.105
04	0.092	0.337	0.033	0.538
05	0.051	0.12	0.17	0.659
06	0.019	0.912	0.021	0.048
07	0.198	0.523	0.026	0.253
08	0.642	0.074	0.235	0.048
09	0.01	0.029	0.031	0.931
10	0.12	0.009	0.853	0.019
11	0.036	0.022	0.928	0.014
12	0.006	0.974	0.002	0.017
13	0.006	0.005	0.001	0.988
14	0.001	0.963	0.025	0.011
15	0.031	0.936	0.014	0.02
16	0.004	0.97	0.001	0.025
17	0.253	0.333	0.026	0.388
18	0.579	0.222	0.121	0.078
19	0.027	0.318	0.249	0.405
20	0.032	0.084	0.124	0.76
21	0.169	0.151	0.524	0.156
22	0.043	0.851	0.026	0.079
23	0.052	0.726	0.019	0.203

PWM

	A	C	G	T
01	0.822	-0.913	-0.13	-0.808
02	-1.959	1.179	-1.925	-0.775
03	-1.086	1.157	-2.858	-0.853
04	-0.989	0.297	-1.959	0.762
05	-1.562	-0.723	-0.383	0.964
06	-2.501	1.288	-2.388	-1.61
07	-0.23	0.734	-2.194	0.011
08	0.938	-1.193	-0.059	-1.61
09	-3.046	-2.11	-2.032	1.308
10	-0.723	-3.155	1.221	-2.501
11	-1.892	-2.336	1.306	-2.776
12	-3.417	1.354	-4.014	-2.563
13	-3.417	-3.58	-4.332	1.368
14	-4.332	1.342	-2.239	-2.948
15	-2.032	1.314	-2.776	-2.443
16	-3.773	1.35	-4.332	-2.239
17	0.011	0.286	-2.194	0.436
18	0.835	-0.119	-0.713	-1.146
19	-2.151	0.24	-0.004	0.48
20	-1.995	-1.071	-0.694	1.106
21	-0.39	-0.498	0.736	-0.466
22	-1.713	1.219	-2.194	-1.131
23	-1.539	1.061	-2.501	-0.205

Standard thresholds

P-value	Threshold
0.001	-0.79699
0.0005	0.65536
0.0001	3.75396