MotifZNF12.H12INVIVO.2.S.C
Gene (human)ZNF12
(GeneCards)
Gene synonyms (human)GIOT3, KOX3, ZNF325
Gene (mouse)Znf12
Gene synonyms (mouse)Zfp12
LOGO
LOGO (reverse complement)
Motif subtype2
Quality
C
Motif length18
ConsensusnnTRWAACAARhRdbnMv
GC content41.76%
Information content (bits; total / per base)12.759 / 0.709
Data sourcesHT-SELEX
Aligned words9614

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.783 0.79 0.75 0.757 0.796 0.8 3.718 3.729 111.819 152.022

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.952 0.949 0.748 0.77 0.62 0.657
best 0.953 0.951 0.751 0.771 0.624 0.659
Methyl HT-SELEX, 1 experiments median 0.953 0.951 0.745 0.769 0.616 0.656
best 0.953 0.951 0.745 0.769 0.616 0.656
Non-Methyl HT-SELEX, 1 experiments median 0.951 0.946 0.751 0.771 0.624 0.659
best 0.951 0.946 0.751 0.771 0.624 0.659
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF12-like {2.3.3.81} (TFClass)
TFClass IDTFClass: 2.3.3.81.1
HGNCHGNC:12902
MGIMGI:99157
EntrezGene (human)GeneID:7559
(SSTAR profile)
EntrezGene (mouse)GeneID:231866
(SSTAR profile)
UniProt ID (human)ZNF12_HUMAN
UniProt ID (mouse)ZNF12_MOUSE
UniProt AC (human)P17014
(TFClass)
UniProt AC (mouse)Q7TSI0
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
011894.251951.253868.251900.25
021998.753865.751863.751885.75
03510.0462.0857.07785.0
045642.0219.03490.0263.0
051737.0732.0264.06881.0
068729.028.0801.056.0
079417.022.0169.06.0
0831.08806.0741.036.0
097175.02.02421.016.0
108773.0208.0213.0420.0
114897.01014.03532.0171.0
123256.02312.01183.02863.0
136600.0709.01895.0410.0
142017.0946.05076.01575.0
151173.02605.04488.01348.0
163271.03082.01544.01717.0
171358.256483.25633.251139.25
182155.753887.751897.751672.75
PFM
ACGT
010.1970.2030.4020.198
020.2080.4020.1940.196
030.0530.0480.0890.81
040.5870.0230.3630.027
050.1810.0760.0270.716
060.9080.0030.0830.006
070.980.0020.0180.001
080.0030.9160.0770.004
090.7460.00.2520.002
100.9130.0220.0220.044
110.5090.1050.3670.018
120.3390.240.1230.298
130.6860.0740.1970.043
140.210.0980.5280.164
150.1220.2710.4670.14
160.340.3210.1610.179
170.1410.6740.0660.118
180.2240.4040.1970.174
PWM
ACGT
01-0.238-0.2080.476-0.235
02-0.1840.475-0.254-0.242
03-1.547-1.645-1.031.175
040.853-2.3860.373-2.205
05-0.324-1.187-2.2011.051
061.289-4.375-1.097-3.72
071.365-4.595-2.642-5.67
08-4.281.298-1.175-4.14
091.093-6.3290.007-4.879
101.294-2.437-2.414-1.74
110.711-0.8620.385-2.631
120.303-0.039-0.7080.175
131.01-1.219-0.237-1.764
14-0.175-0.9310.747-0.422
15-0.7160.080.624-0.578
160.3080.248-0.442-0.336
17-0.570.992-1.331-0.745
18-0.1090.481-0.236-0.362
Standard thresholds
P-value Threshold
0.001 3.87916
0.0005 4.92901
0.0001 7.06446