| Motif | ZNF12.H12INVITRO.1.M.C |
| Gene (human) | ZNF12 (GeneCards) |
| Gene synonyms (human) | GIOT3, KOX3, ZNF325 |
| Gene (mouse) | Znf12 |
| Gene synonyms (mouse) | Zfp12 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | C |
| Motif | ZNF12.H12INVITRO.1.M.C |
| Gene (human) | ZNF12 (GeneCards) |
| Gene synonyms (human) | GIOT3, KOX3, ZNF325 |
| Gene (mouse) | Znf12 |
| Gene synonyms (mouse) | Zfp12 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | C |
| Motif length | 21 |
| Consensus | vhGCWATAACGAGYAbSMCYn |
| GC content | 52.4% |
| Information content (bits; total / per base) | 21.712 / 1.034 |
| Data sources | Methyl-HT-SELEX |
| Aligned words | 8588 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (4) | 0.845 | 0.857 | 0.81 | 0.822 | 0.822 | 0.839 | 4.262 | 4.461 | 137.634 | 181.032 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.828 | 0.832 | 0.674 | 0.693 | 0.586 | 0.613 |
| best | 0.97 | 0.97 | 0.76 | 0.785 | 0.625 | 0.666 | |
| Methyl HT-SELEX, 1 experiments | median | 0.97 | 0.97 | 0.76 | 0.785 | 0.625 | 0.666 |
| best | 0.97 | 0.97 | 0.76 | 0.785 | 0.625 | 0.666 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.685 | 0.694 | 0.588 | 0.602 | 0.548 | 0.56 |
| best | 0.685 | 0.694 | 0.588 | 0.602 | 0.548 | 0.56 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | ZNF12-like {2.3.3.81} (TFClass) |
| TFClass ID | TFClass: 2.3.3.81.1 |
| HGNC | HGNC:12902 |
| MGI | MGI:99157 |
| EntrezGene (human) | GeneID:7559 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:231866 (SSTAR profile) |
| UniProt ID (human) | ZNF12_HUMAN |
| UniProt ID (mouse) | ZNF12_MOUSE |
| UniProt AC (human) | P17014 (TFClass) |
| UniProt AC (mouse) | Q7TSI0 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| PCM | ZNF12.H12INVITRO.1.M.C.pcm |
| PWM | ZNF12.H12INVITRO.1.M.C.pwm |
| PFM | ZNF12.H12INVITRO.1.M.C.pfm |
| Alignment | ZNF12.H12INVITRO.1.M.C.words.tsv |
| Threshold to P-value map | ZNF12.H12INVITRO.1.M.C.thr |
| Motif in other formats | |
| JASPAR format | ZNF12.H12INVITRO.1.M.C_jaspar_format.txt |
| MEME format | ZNF12.H12INVITRO.1.M.C_meme_format.meme |
| Transfac format | ZNF12.H12INVITRO.1.M.C_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3340.75 | 2412.75 | 1939.75 | 894.75 |
| 02 | 1291.5 | 3544.5 | 1002.5 | 2749.5 |
| 03 | 157.0 | 392.0 | 7660.0 | 379.0 |
| 04 | 1100.0 | 7146.0 | 121.0 | 221.0 |
| 05 | 1570.0 | 506.0 | 318.0 | 6194.0 |
| 06 | 6305.0 | 90.0 | 2053.0 | 140.0 |
| 07 | 347.0 | 815.0 | 16.0 | 7410.0 |
| 08 | 8098.0 | 5.0 | 484.0 | 1.0 |
| 09 | 8574.0 | 4.0 | 9.0 | 1.0 |
| 10 | 7.0 | 8532.0 | 24.0 | 25.0 |
| 11 | 2138.0 | 7.0 | 6441.0 | 2.0 |
| 12 | 8473.0 | 22.0 | 25.0 | 68.0 |
| 13 | 930.0 | 761.0 | 6856.0 | 41.0 |
| 14 | 423.0 | 5780.0 | 156.0 | 2229.0 |
| 15 | 8161.0 | 145.0 | 220.0 | 62.0 |
| 16 | 533.0 | 1658.0 | 2834.0 | 3563.0 |
| 17 | 358.0 | 4829.0 | 2672.0 | 729.0 |
| 18 | 1959.0 | 5557.0 | 193.0 | 879.0 |
| 19 | 215.0 | 8030.0 | 59.0 | 284.0 |
| 20 | 647.0 | 6073.0 | 820.0 | 1048.0 |
| 21 | 2135.25 | 2604.25 | 1694.25 | 2154.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.389 | 0.281 | 0.226 | 0.104 |
| 02 | 0.15 | 0.413 | 0.117 | 0.32 |
| 03 | 0.018 | 0.046 | 0.892 | 0.044 |
| 04 | 0.128 | 0.832 | 0.014 | 0.026 |
| 05 | 0.183 | 0.059 | 0.037 | 0.721 |
| 06 | 0.734 | 0.01 | 0.239 | 0.016 |
| 07 | 0.04 | 0.095 | 0.002 | 0.863 |
| 08 | 0.943 | 0.001 | 0.056 | 0.0 |
| 09 | 0.998 | 0.0 | 0.001 | 0.0 |
| 10 | 0.001 | 0.993 | 0.003 | 0.003 |
| 11 | 0.249 | 0.001 | 0.75 | 0.0 |
| 12 | 0.987 | 0.003 | 0.003 | 0.008 |
| 13 | 0.108 | 0.089 | 0.798 | 0.005 |
| 14 | 0.049 | 0.673 | 0.018 | 0.26 |
| 15 | 0.95 | 0.017 | 0.026 | 0.007 |
| 16 | 0.062 | 0.193 | 0.33 | 0.415 |
| 17 | 0.042 | 0.562 | 0.311 | 0.085 |
| 18 | 0.228 | 0.647 | 0.022 | 0.102 |
| 19 | 0.025 | 0.935 | 0.007 | 0.033 |
| 20 | 0.075 | 0.707 | 0.095 | 0.122 |
| 21 | 0.249 | 0.303 | 0.197 | 0.251 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.442 | 0.117 | -0.101 | -0.874 |
| 02 | -0.508 | 0.501 | -0.76 | 0.247 |
| 03 | -2.602 | -1.696 | 1.271 | -1.729 |
| 04 | -0.668 | 1.202 | -2.859 | -2.265 |
| 05 | -0.313 | -1.442 | -1.904 | 1.059 |
| 06 | 1.077 | -3.148 | -0.045 | -2.715 |
| 07 | -1.817 | -0.967 | -4.768 | 1.238 |
| 08 | 1.327 | -5.69 | -1.486 | -6.49 |
| 09 | 1.384 | -5.838 | -5.251 | -6.49 |
| 10 | -5.447 | 1.379 | -4.405 | -4.367 |
| 11 | -0.004 | -5.447 | 1.098 | -6.223 |
| 12 | 1.372 | -4.484 | -4.367 | -3.421 |
| 13 | -0.835 | -1.035 | 1.16 | -3.906 |
| 14 | -1.62 | 0.99 | -2.609 | 0.037 |
| 15 | 1.335 | -2.681 | -2.269 | -3.51 |
| 16 | -1.39 | -0.258 | 0.277 | 0.506 |
| 17 | -1.786 | 0.81 | 0.219 | -1.078 |
| 18 | -0.092 | 0.95 | -2.399 | -0.892 |
| 19 | -2.292 | 1.318 | -3.558 | -2.016 |
| 20 | -1.197 | 1.039 | -0.961 | -0.716 |
| 21 | -0.005 | 0.193 | -0.237 | 0.003 |
| P-value | Threshold |
|---|---|
| 0.001 | -1.62189 |
| 0.0005 | 0.04091 |
| 0.0001 | 3.52806 |