| Motif | ZNF12.H12INVITRO.0.P.C |
| Gene (human) | ZNF12 (GeneCards) |
| Gene synonyms (human) | GIOT3, KOX3, ZNF325 |
| Gene (mouse) | Znf12 |
| Gene synonyms (mouse) | Zfp12 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | C |
| Motif | ZNF12.H12INVITRO.0.P.C |
| Gene (human) | ZNF12 (GeneCards) |
| Gene synonyms (human) | GIOT3, KOX3, ZNF325 |
| Gene (mouse) | Znf12 |
| Gene synonyms (mouse) | Zfp12 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | C |
| Motif length | 24 |
| Consensus | dGCWGCdRWRASRRRhdvvYMhvv |
| GC content | 50.27% |
| Information content (bits; total / per base) | 15.047 / 0.627 |
| Data sources | ChIP-Seq |
| Aligned words | 997 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (4) | 0.881 | 0.886 | 0.865 | 0.871 | 0.88 | 0.886 | 7.899 | 8.078 | 172.194 | 227.268 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.775 | 0.781 | 0.637 | 0.657 | 0.563 | 0.589 |
| best | 0.91 | 0.906 | 0.72 | 0.738 | 0.604 | 0.638 | |
| Methyl HT-SELEX, 1 experiments | median | 0.91 | 0.906 | 0.72 | 0.738 | 0.604 | 0.638 |
| best | 0.91 | 0.906 | 0.72 | 0.738 | 0.604 | 0.638 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.64 | 0.655 | 0.554 | 0.575 | 0.521 | 0.54 |
| best | 0.64 | 0.655 | 0.554 | 0.575 | 0.521 | 0.54 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | ZNF12-like {2.3.3.81} (TFClass) |
| TFClass ID | TFClass: 2.3.3.81.1 |
| HGNC | HGNC:12902 |
| MGI | MGI:99157 |
| EntrezGene (human) | GeneID:7559 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:231866 (SSTAR profile) |
| UniProt ID (human) | ZNF12_HUMAN |
| UniProt ID (mouse) | ZNF12_MOUSE |
| UniProt AC (human) | P17014 (TFClass) |
| UniProt AC (mouse) | Q7TSI0 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| PCM | ZNF12.H12INVITRO.0.P.C.pcm |
| PWM | ZNF12.H12INVITRO.0.P.C.pwm |
| PFM | ZNF12.H12INVITRO.0.P.C.pfm |
| Alignment | ZNF12.H12INVITRO.0.P.C.words.tsv |
| Threshold to P-value map | ZNF12.H12INVITRO.0.P.C.thr |
| Motif in other formats | |
| JASPAR format | ZNF12.H12INVITRO.0.P.C_jaspar_format.txt |
| MEME format | ZNF12.H12INVITRO.0.P.C_meme_format.meme |
| Transfac format | ZNF12.H12INVITRO.0.P.C_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 238.0 | 93.0 | 217.0 | 449.0 |
| 02 | 31.0 | 31.0 | 911.0 | 24.0 |
| 03 | 69.0 | 837.0 | 57.0 | 34.0 |
| 04 | 107.0 | 100.0 | 69.0 | 721.0 |
| 05 | 52.0 | 20.0 | 836.0 | 89.0 |
| 06 | 66.0 | 831.0 | 41.0 | 59.0 |
| 07 | 393.0 | 75.0 | 121.0 | 408.0 |
| 08 | 294.0 | 56.0 | 601.0 | 46.0 |
| 09 | 174.0 | 135.0 | 72.0 | 616.0 |
| 10 | 708.0 | 29.0 | 242.0 | 18.0 |
| 11 | 899.0 | 27.0 | 60.0 | 11.0 |
| 12 | 58.0 | 727.0 | 185.0 | 27.0 |
| 13 | 762.0 | 40.0 | 166.0 | 29.0 |
| 14 | 787.0 | 51.0 | 128.0 | 31.0 |
| 15 | 609.0 | 114.0 | 244.0 | 30.0 |
| 16 | 272.0 | 358.0 | 126.0 | 241.0 |
| 17 | 570.0 | 91.0 | 183.0 | 153.0 |
| 18 | 385.0 | 137.0 | 344.0 | 131.0 |
| 19 | 176.0 | 434.0 | 250.0 | 137.0 |
| 20 | 140.0 | 611.0 | 86.0 | 160.0 |
| 21 | 174.0 | 635.0 | 76.0 | 112.0 |
| 22 | 128.0 | 572.0 | 100.0 | 197.0 |
| 23 | 384.0 | 295.0 | 169.0 | 149.0 |
| 24 | 456.0 | 198.0 | 248.0 | 95.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.239 | 0.093 | 0.218 | 0.45 |
| 02 | 0.031 | 0.031 | 0.914 | 0.024 |
| 03 | 0.069 | 0.84 | 0.057 | 0.034 |
| 04 | 0.107 | 0.1 | 0.069 | 0.723 |
| 05 | 0.052 | 0.02 | 0.839 | 0.089 |
| 06 | 0.066 | 0.834 | 0.041 | 0.059 |
| 07 | 0.394 | 0.075 | 0.121 | 0.409 |
| 08 | 0.295 | 0.056 | 0.603 | 0.046 |
| 09 | 0.175 | 0.135 | 0.072 | 0.618 |
| 10 | 0.71 | 0.029 | 0.243 | 0.018 |
| 11 | 0.902 | 0.027 | 0.06 | 0.011 |
| 12 | 0.058 | 0.729 | 0.186 | 0.027 |
| 13 | 0.764 | 0.04 | 0.166 | 0.029 |
| 14 | 0.789 | 0.051 | 0.128 | 0.031 |
| 15 | 0.611 | 0.114 | 0.245 | 0.03 |
| 16 | 0.273 | 0.359 | 0.126 | 0.242 |
| 17 | 0.572 | 0.091 | 0.184 | 0.153 |
| 18 | 0.386 | 0.137 | 0.345 | 0.131 |
| 19 | 0.177 | 0.435 | 0.251 | 0.137 |
| 20 | 0.14 | 0.613 | 0.086 | 0.16 |
| 21 | 0.175 | 0.637 | 0.076 | 0.112 |
| 22 | 0.128 | 0.574 | 0.1 | 0.198 |
| 23 | 0.385 | 0.296 | 0.17 | 0.149 |
| 24 | 0.457 | 0.199 | 0.249 | 0.095 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.046 | -0.974 | -0.138 | 0.586 |
| 02 | -2.037 | -2.037 | 1.291 | -2.278 |
| 03 | -1.267 | 1.207 | -1.452 | -1.949 |
| 04 | -0.837 | -0.903 | -1.267 | 1.058 |
| 05 | -1.541 | -2.447 | 1.205 | -1.018 |
| 06 | -1.31 | 1.199 | -1.771 | -1.419 |
| 07 | 0.453 | -1.185 | -0.715 | 0.49 |
| 08 | 0.164 | -1.47 | 0.876 | -1.66 |
| 09 | -0.356 | -0.607 | -1.225 | 0.901 |
| 10 | 1.04 | -2.1 | -0.029 | -2.543 |
| 11 | 1.278 | -2.168 | -1.403 | -2.982 |
| 12 | -1.436 | 1.066 | -0.296 | -2.168 |
| 13 | 1.113 | -1.794 | -0.403 | -2.1 |
| 14 | 1.145 | -1.56 | -0.66 | -2.037 |
| 15 | 0.889 | -0.774 | -0.021 | -2.068 |
| 16 | 0.087 | 0.36 | -0.675 | -0.033 |
| 17 | 0.823 | -0.996 | -0.306 | -0.484 |
| 18 | 0.432 | -0.593 | 0.32 | -0.637 |
| 19 | -0.345 | 0.552 | 0.003 | -0.593 |
| 20 | -0.571 | 0.893 | -1.051 | -0.439 |
| 21 | -0.356 | 0.931 | -1.172 | -0.792 |
| 22 | -0.66 | 0.827 | -0.903 | -0.233 |
| 23 | 0.43 | 0.167 | -0.385 | -0.51 |
| 24 | 0.601 | -0.228 | -0.005 | -0.953 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.45401 |
| 0.0005 | 4.45556 |
| 0.0001 | 6.59006 |